data_2WGI # _model_server_result.job_id 4kvDNuZ4oJ2TxHpVi7vanA _model_server_result.datetime_utc '2024-11-13 07:42:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":700}' # _entry.id 2WGI # _exptl.entry_id 2WGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OPEN FORM - PENICILLIN G' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WGI _cell.length_a 48.8 _cell.length_b 93.1 _cell.length_c 127.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 44 1_555 A SG CYS 33 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 26 B CYS 44 1_555 B SG CYS 33 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A OG SER 49 A SER 67 1_555 C C7 PNM . A PNM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B OG SER 49 B SER 67 1_555 D C7 PNM . B PNM 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'C16 H20 N2 O4 S' _chem_comp.formula_weight 336.406 _chem_comp.id PNM _chem_comp.mon_nstd_flag . _chem_comp.name 'OPEN FORM - PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNM doub 273 n n C7 C6 PNM sing 274 n n C7 HC7 PNM sing 275 n n N4 C3 PNM sing 276 n n N4 C5 PNM sing 277 n n N4 H4 PNM sing 278 n n C3 C11 PNM sing 279 n n C3 C2 PNM sing 280 n n C3 HC3 PNM sing 281 n n C11 O13 PNM sing 282 n n C11 O12 PNM doub 283 n n O13 HXT PNM sing 284 n n C2 C10 PNM sing 285 n n C2 C9 PNM sing 286 n n C2 S1 PNM sing 287 n n C10 H101 PNM sing 288 n n C10 H102 PNM sing 289 n n C10 H103 PNM sing 290 n n C9 HC91 PNM sing 291 n n C9 HC92 PNM sing 292 n n C9 HC93 PNM sing 293 n n S1 C5 PNM sing 294 n n C5 C6 PNM sing 295 n n C5 HC5 PNM sing 296 n n C6 N14 PNM sing 297 n n C6 HC6 PNM sing 298 n n N14 C15 PNM sing 299 n n N14 H14 PNM sing 300 n n C15 O16 PNM doub 301 n n C15 C17 PNM sing 302 n n C17 C18 PNM sing 303 n n C17 H171 PNM sing 304 n n C17 H172 PNM sing 305 n n C18 C19 PNM doub 306 n y C18 C23 PNM sing 307 n y C19 C20 PNM sing 308 n y C19 H19 PNM sing 309 n n C20 C21 PNM doub 310 n y C20 H20 PNM sing 311 n n C21 C22 PNM sing 312 n y C21 H21 PNM sing 313 n n C22 C23 PNM doub 314 n y C22 H22 PNM sing 315 n n C23 H23 PNM sing 316 n n # _atom_sites.entry_id 2WGI _atom_sites.fract_transf_matrix[1][1] 0.020492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PNM A 1 700 700 PNM PNM . D 2 PNM B 1 700 700 PNM PNM . E 3 GOL B 1 1266 1266 GOL GOL . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNM . . . D 2 19.182 19.534 37.411 1 36.61 ? O8 PNM 700 B 1 HETATM 2 C C7 PNM . . . D 2 19.511 19.082 38.544 1 35.66 ? C7 PNM 700 B 1 HETATM 3 N N4 PNM . . . D 2 17.207 19.885 40.081 1 44.69 ? N4 PNM 700 B 1 HETATM 4 C C3 PNM . . . D 2 16.249 20.961 40.253 1 46.08 ? C3 PNM 700 B 1 HETATM 5 C C11 PNM . . . D 2 14.848 20.472 40.522 1 47.66 ? C11 PNM 700 B 1 HETATM 6 O O13 PNM . . . D 2 13.896 21.284 40.387 1 48.11 ? O13 PNM 700 B 1 HETATM 7 O O12 PNM . . . D 2 14.688 19.276 40.866 1 48.93 ? O12 PNM 700 B 1 HETATM 8 C C2 PNM . . . D 2 16.759 21.867 41.373 1 45.38 ? C2 PNM 700 B 1 HETATM 9 C C10 PNM . . . D 2 16.469 23.332 41.045 1 45.34 ? C10 PNM 700 B 1 HETATM 10 C C9 PNM . . . D 2 16.141 21.488 42.724 1 45.78 ? C9 PNM 700 B 1 HETATM 11 S S1 PNM . . . D 2 18.52 21.65 41.485 1 43.88 ? S1 PNM 700 B 1 HETATM 12 C C5 PNM . . . D 2 18.555 20.142 40.554 1 43.19 ? C5 PNM 700 B 1 HETATM 13 C C6 PNM . . . D 2 19.593 20.233 39.402 1 40.91 ? C6 PNM 700 B 1 HETATM 14 N N14 PNM . . . D 2 19.445 21.523 38.677 1 44.2 ? N14 PNM 700 B 1 HETATM 15 C C15 PNM . . . D 2 20.251 22.597 38.825 1 46.84 ? C15 PNM 700 B 1 HETATM 16 O O16 PNM . . . D 2 21.076 22.698 39.732 1 47.68 ? O16 PNM 700 B 1 HETATM 17 C C17 PNM . . . D 2 20.114 23.72 37.797 1 48.88 ? C17 PNM 700 B 1 HETATM 18 C C18 PNM . . . D 2 19.396 24.947 38.351 1 49.93 ? C18 PNM 700 B 1 HETATM 19 C C19 PNM . . . D 2 19.848 25.589 39.521 1 50.58 ? C19 PNM 700 B 1 HETATM 20 C C20 PNM . . . D 2 19.172 26.715 40.016 1 51.07 ? C20 PNM 700 B 1 HETATM 21 C C21 PNM . . . D 2 18.044 27.204 39.338 1 50.57 ? C21 PNM 700 B 1 HETATM 22 C C22 PNM . . . D 2 17.592 26.575 38.173 1 50.35 ? C22 PNM 700 B 1 HETATM 23 C C23 PNM . . . D 2 18.269 25.451 37.68 1 50.33 ? C23 PNM 700 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #