data_2WJD # _model_server_result.job_id faB4sM8f3XFofjV7a6ruYQ _model_server_result.datetime_utc '2024-10-14 22:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1251}' # _entry.id 2WJD # _exptl.entry_id 2WJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.36 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SAMARIUM (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WJD _cell.length_a 88.85 _cell.length_b 88.85 _cell.length_c 92.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 92.31 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 9 A HIS 5 1_555 H MN MN . A MN 1250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 11 A HIS 7 1_555 H MN MN . A MN 1250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 A OD2 ASP 18 A ASP 14 1_555 K MN MN . A MN 1253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 A OD1 ASP 18 A ASP 14 1_555 K MN MN . A MN 1253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc5 A NE2 HIS 46 A HIS 42 1_555 K MN MN . A MN 1253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 A OE1 GLU 84 A GLU 80 1_555 G MN MN . A MN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 A OE2 GLU 84 A GLU 80 1_555 H MN MN . A MN 1250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 A OE2 GLU 112 A GLU 108 1_555 G MN MN . A MN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 A NE2 HIS 140 A HIS 136 1_555 G MN MN . A MN 1249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc10 A OE1 GLU 151 A GLU 147 1_555 I SM SM . A SM 1251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc11 A OD1 ASP 203 A ASP 199 1_555 H MN MN . A MN 1250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 A NE2 HIS 205 A HIS 201 1_555 K MN MN . A MN 1253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc13 G MN MN . A MN 1249 1_555 L O HOH . A HOH 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 H MN MN . A MN 1250 1_555 L O HOH . A HOH 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc15 K MN MN . A MN 1253 1_555 L O HOH . A HOH 2073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'Sm 3' _chem_comp.formula_weight 150.36 _chem_comp.id SM _chem_comp.mon_nstd_flag . _chem_comp.name 'SAMARIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WJD _atom_sites.fract_transf_matrix[1][1] 0.011255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1244 1244 SO4 SO4 . C 2 SO4 A 1 1245 1245 SO4 SO4 . D 2 SO4 A 1 1246 1246 SO4 SO4 . E 2 SO4 A 1 1247 1247 SO4 SO4 . F 2 SO4 A 1 1248 1248 SO4 SO4 . G 3 MN A 1 1249 1249 MN MN . H 3 MN A 1 1250 1250 MN MN . I 4 SM A 1 1251 1251 SM SM . J 4 SM A 1 1252 1252 SM SM . K 3 MN A 1 1253 1253 MN MN . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . L 5 HOH A 4 2004 2004 HOH HOH . L 5 HOH A 5 2005 2005 HOH HOH . L 5 HOH A 6 2006 2006 HOH HOH . L 5 HOH A 7 2007 2007 HOH HOH . L 5 HOH A 8 2008 2008 HOH HOH . L 5 HOH A 9 2009 2009 HOH HOH . L 5 HOH A 10 2010 2010 HOH HOH . L 5 HOH A 11 2011 2011 HOH HOH . L 5 HOH A 12 2012 2012 HOH HOH . L 5 HOH A 13 2013 2013 HOH HOH . L 5 HOH A 14 2014 2014 HOH HOH . L 5 HOH A 15 2015 2015 HOH HOH . L 5 HOH A 16 2016 2016 HOH HOH . L 5 HOH A 17 2017 2017 HOH HOH . L 5 HOH A 18 2018 2018 HOH HOH . L 5 HOH A 19 2019 2019 HOH HOH . L 5 HOH A 20 2020 2020 HOH HOH . L 5 HOH A 21 2021 2021 HOH HOH . L 5 HOH A 22 2022 2022 HOH HOH . L 5 HOH A 23 2023 2023 HOH HOH . L 5 HOH A 24 2024 2024 HOH HOH . L 5 HOH A 25 2025 2025 HOH HOH . L 5 HOH A 26 2026 2026 HOH HOH . L 5 HOH A 27 2027 2027 HOH HOH . L 5 HOH A 28 2028 2028 HOH HOH . L 5 HOH A 29 2029 2029 HOH HOH . L 5 HOH A 30 2030 2030 HOH HOH . L 5 HOH A 31 2031 2031 HOH HOH . L 5 HOH A 32 2032 2032 HOH HOH . L 5 HOH A 33 2033 2033 HOH HOH . L 5 HOH A 34 2034 2034 HOH HOH . L 5 HOH A 35 2035 2035 HOH HOH . L 5 HOH A 36 2036 2036 HOH HOH . L 5 HOH A 37 2037 2037 HOH HOH . L 5 HOH A 38 2038 2038 HOH HOH . L 5 HOH A 39 2039 2039 HOH HOH . L 5 HOH A 40 2040 2040 HOH HOH . L 5 HOH A 41 2041 2041 HOH HOH . L 5 HOH A 42 2042 2042 HOH HOH . L 5 HOH A 43 2043 2043 HOH HOH . L 5 HOH A 44 2044 2044 HOH HOH . L 5 HOH A 45 2045 2045 HOH HOH . L 5 HOH A 46 2046 2046 HOH HOH . L 5 HOH A 47 2047 2047 HOH HOH . L 5 HOH A 48 2048 2048 HOH HOH . L 5 HOH A 49 2049 2049 HOH HOH . L 5 HOH A 50 2050 2050 HOH HOH . L 5 HOH A 51 2051 2051 HOH HOH . L 5 HOH A 52 2052 2052 HOH HOH . L 5 HOH A 53 2053 2053 HOH HOH . L 5 HOH A 54 2054 2054 HOH HOH . L 5 HOH A 55 2055 2055 HOH HOH . L 5 HOH A 56 2056 2056 HOH HOH . L 5 HOH A 57 2057 2057 HOH HOH . L 5 HOH A 58 2058 2058 HOH HOH . L 5 HOH A 59 2059 2059 HOH HOH . L 5 HOH A 60 2060 2060 HOH HOH . L 5 HOH A 61 2061 2061 HOH HOH . L 5 HOH A 62 2062 2062 HOH HOH . L 5 HOH A 63 2063 2063 HOH HOH . L 5 HOH A 64 2064 2064 HOH HOH . L 5 HOH A 65 2065 2065 HOH HOH . L 5 HOH A 66 2066 2066 HOH HOH . L 5 HOH A 67 2067 2067 HOH HOH . L 5 HOH A 68 2068 2068 HOH HOH . L 5 HOH A 69 2069 2069 HOH HOH . L 5 HOH A 70 2070 2070 HOH HOH . L 5 HOH A 71 2071 2071 HOH HOH . L 5 HOH A 72 2072 2072 HOH HOH . L 5 HOH A 73 2073 2073 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SM _atom_site.label_atom_id SM _atom_site.label_comp_id SM _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 70.878 _atom_site.Cartn_y 32.246 _atom_site.Cartn_z 59.813 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 101.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SM _atom_site.auth_comp_id SM _atom_site.auth_seq_id 1251 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #