data_2WJS # _model_server_result.job_id XHYwMLa-mj7uwOwxbgv5fw _model_server_result.datetime_utc '2024-12-26 15:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wjs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5003}' # _entry.id 2WJS # _exptl.entry_id 2WJS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WJS _cell.length_a 138.829 _cell.length_b 138.829 _cell.length_c 73.895 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 2150 1_555 A SG CYS 190 A CYS 2321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 167 A CYS 2298 1_555 A SG CYS 193 A CYS 2324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 356 A CYS 2491 1_555 A SG CYS 382 A CYS 2517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 532 A CYS 2679 1_555 A SG CYS 559 A CYS 2706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 105 A ASN 2236 1_555 B C1 NAG . A NAG 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 225 A ASN 2356 1_555 C C1 NAG . A NAG 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 300 A ASN 2431 1_555 D C1 NAG . A NAG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 419 A ASN 2554 1_555 E C1 NAG . A NAG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A OD2 ASP 58 A ASP 2189 1_555 F CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc2 A O VAL 75 A VAL 2206 1_555 F CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc3 A O ILE 135 A ILE 2266 1_555 F CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 A OD2 ASP 137 A ASP 2268 1_555 F CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 A OD2 ASP 252 A ASP 2383 1_555 G CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc6 A OD1 ASP 252 A ASP 2383 1_555 H CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc7 A O LEU 269 A LEU 2400 1_555 G CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc8 A O GLY 324 A GLY 2455 1_555 G CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 A OD2 ASP 326 A ASP 2457 1_555 G CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WJS _atom_sites.fract_transf_matrix[1][1] 0.007203 _atom_sites.fract_transf_matrix[1][2] 0.004159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 4001 4001 NAG NAG . C 2 NAG A 1 4002 4002 NAG NAG . D 2 NAG A 1 4003 4003 NAG NAG . E 2 NAG A 1 4004 4004 NAG NAG . F 3 CA A 1 5001 5001 CA CA . G 3 CA A 1 5002 5002 CA CA . H 3 CA A 1 5003 5003 CA CA . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . I 4 HOH A 55 2055 2055 HOH HOH . I 4 HOH A 56 2056 2056 HOH HOH . I 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH A 58 2058 2058 HOH HOH . I 4 HOH A 59 2059 2059 HOH HOH . I 4 HOH A 60 2060 2060 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 45.457 _atom_site.Cartn_y 80.627 _atom_site.Cartn_z 56.9 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #