data_2WKS # _model_server_result.job_id rnroKoOk30aFpmgSUN2ljg _model_server_result.datetime_utc '2025-01-03 00:10:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1154}' # _entry.id 2WKS # _exptl.entry_id 2WKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,4S,5R)-1,4,5-trihydroxy-3-[(5-methyl-1-benzothiophen-2-yl)methoxy]cyclohex-2-ene-1-carboxylic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WKS _cell.length_a 157.85 _cell.length_b 157.85 _cell.length_c 99.78 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C17 H18 O6 S' _chem_comp.formula_weight 350.386 _chem_comp.id CB6 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,4S,5R)-1,4,5-trihydroxy-3-[(5-methyl-1-benzothiophen-2-yl)methoxy]cyclohex-2-ene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAT CB6 sing 70 n y CAK CAS CB6 doub 71 n y CAT CAI CB6 sing 72 n y CAT CAU CB6 doub 73 n y CAI CAH CB6 doub 74 n y CAH CAR CB6 sing 75 n y CAH CAA CB6 sing 76 n n CAR CAJ CB6 doub 77 n y CAJ CAU CB6 sing 78 n y CAU SAO CB6 sing 79 n y SAO CAS CB6 sing 80 n y CAS CAL CB6 sing 81 n n CAL OAN CB6 sing 82 n n OAN CAQ CB6 sing 83 n n CAQ CAG CB6 doub 84 n n CAQ CAW CB6 sing 85 n n CAG CAX CB6 sing 86 n n CAX CAP CB6 sing 87 n n CAX OAF CB6 sing 88 n n CAX CAM CB6 sing 89 n n CAP OAC CB6 doub 90 n n CAP OAB CB6 sing 91 n n CAM CAV CB6 sing 92 n n CAV OAD CB6 sing 93 n n CAV CAW CB6 sing 94 n n CAW OAE CB6 sing 95 n n CAK HAK CB6 sing 96 n n CAI HAI CB6 sing 97 n n CAR HAR CB6 sing 98 n n CAA HAA1 CB6 sing 99 n n CAA HAA2 CB6 sing 100 n n CAA HAA3 CB6 sing 101 n n CAJ HAJ CB6 sing 102 n n CAL HAL1 CB6 sing 103 n n CAL HAL2 CB6 sing 104 n n CAG HAG CB6 sing 105 n n CAW HAW CB6 sing 106 n n OAF HAF CB6 sing 107 n n CAM HAM1 CB6 sing 108 n n CAM HAM2 CB6 sing 109 n n OAB HAB CB6 sing 110 n n CAV HAV CB6 sing 111 n n OAD HAD CB6 sing 112 n n OAE HAE CB6 sing 113 n n # _atom_sites.entry_id 2WKS _atom_sites.fract_transf_matrix[1][1] 0.006335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CB6 A 1 1154 1154 CB6 CB6 . H 2 CB6 B 1 1154 1154 CB6 CB6 . I 2 CB6 C 1 1154 1154 CB6 CB6 . J 2 CB6 D 1 1154 1154 CB6 CB6 . K 2 CB6 E 1 1154 1154 CB6 CB6 . L 2 CB6 F 1 1154 1154 CB6 CB6 . M 3 HOH A 1 2001 2001 HOH HOH . M 3 HOH A 2 2002 2002 HOH HOH . M 3 HOH A 3 2003 2003 HOH HOH . N 3 HOH B 1 2001 2001 HOH HOH . N 3 HOH B 2 2002 2002 HOH HOH . N 3 HOH B 3 2003 2003 HOH HOH . O 3 HOH C 1 2001 2001 HOH HOH . O 3 HOH C 2 2002 2002 HOH HOH . O 3 HOH C 3 2003 2003 HOH HOH . O 3 HOH C 4 2004 2004 HOH HOH . O 3 HOH C 5 2005 2005 HOH HOH . P 3 HOH D 1 2001 2001 HOH HOH . P 3 HOH D 2 2002 2002 HOH HOH . P 3 HOH D 3 2003 2003 HOH HOH . Q 3 HOH E 1 2001 2001 HOH HOH . Q 3 HOH E 2 2002 2002 HOH HOH . Q 3 HOH E 3 2003 2003 HOH HOH . R 3 HOH F 1 2001 2001 HOH HOH . R 3 HOH F 2 2002 2002 HOH HOH . R 3 HOH F 3 2003 2003 HOH HOH . R 3 HOH F 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK CB6 . . . I 2 24.049 15.665 2.743 1 57.46 ? CAK CB6 1154 C 1 HETATM 2 C CAT CB6 . . . I 2 25.181 15.468 2.011 1 60.63 ? CAT CB6 1154 C 1 HETATM 3 C CAI CB6 . . . I 2 25.603 14.311 1.336 1 62.75 ? CAI CB6 1154 C 1 HETATM 4 C CAH CB6 . . . I 2 26.806 14.271 0.621 1 63.9 ? CAH CB6 1154 C 1 HETATM 5 C CAR CB6 . . . I 2 27.614 15.417 0.562 1 64.15 ? CAR CB6 1154 C 1 HETATM 6 C CAJ CB6 . . . I 2 27.225 16.592 1.212 1 62.01 ? CAJ CB6 1154 C 1 HETATM 7 C CAU CB6 . . . I 2 26.026 16.602 1.929 1 60.83 ? CAU CB6 1154 C 1 HETATM 8 S SAO CB6 . . . I 2 25.271 17.79 2.812 1 59.37 ? SAO CB6 1154 C 1 HETATM 9 C CAS CB6 . . . I 2 23.937 16.892 3.252 1 55.64 ? CAS CB6 1154 C 1 HETATM 10 C CAL CB6 . . . I 2 22.903 17.384 4.031 1 52.02 ? CAL CB6 1154 C 1 HETATM 11 O OAN CB6 . . . I 2 21.773 16.571 4.319 1 47.19 ? OAN CB6 1154 C 1 HETATM 12 C CAQ CB6 . . . I 2 20.594 16.976 3.746 1 40.67 ? CAQ CB6 1154 C 1 HETATM 13 C CAG CB6 . . . I 2 20.216 18.33 3.632 1 36.4 ? CAG CB6 1154 C 1 HETATM 14 C CAX CB6 . . . I 2 18.978 18.732 3.11 1 34.65 ? CAX CB6 1154 C 1 HETATM 15 C CAP CB6 . . . I 2 19.086 19.896 2.157 1 33.02 ? CAP CB6 1154 C 1 HETATM 16 O OAC CB6 . . . I 2 19.603 20.952 2.604 1 32.58 ? OAC CB6 1154 C 1 HETATM 17 O OAB CB6 . . . I 2 18.567 19.742 1.03 1 29.92 ? OAB CB6 1154 C 1 HETATM 18 O OAF CB6 . . . I 2 18.183 19.189 4.201 1 37.06 ? OAF CB6 1154 C 1 HETATM 19 C CAM CB6 . . . I 2 18.167 17.621 2.43 1 35.81 ? CAM CB6 1154 C 1 HETATM 20 C CAV CB6 . . . I 2 18.262 16.318 3.249 1 36.52 ? CAV CB6 1154 C 1 HETATM 21 O OAD CB6 . . . I 2 17.43 15.313 2.689 1 34.94 ? OAD CB6 1154 C 1 HETATM 22 C CAW CB6 . . . I 2 19.692 15.85 3.208 1 37.76 ? CAW CB6 1154 C 1 HETATM 23 O OAE CB6 . . . I 2 19.817 14.654 3.957 1 36.54 ? OAE CB6 1154 C 1 HETATM 24 C CAA CB6 . . . I 2 27.216 12.975 -0.103 1 64.34 ? CAA CB6 1154 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 24 #