data_2WLK # _model_server_result.job_id YPTp5dKXv-nWwqFS1M_3KA _model_server_result.datetime_utc '2025-02-24 09:08:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wlk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1302}' # _entry.id 2WLK # _exptl.entry_id 2WLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WLK _cell.length_a 105.76 _cell.length_b 107.53 _cell.length_c 89.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 105.76 -107.53 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C K K . A K 1302 1_555 D K K . A K 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc2 C K K . A K 1302 1_555 D K K . A K 1303 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc3 C K K . A K 1302 1_555 E K K . A K 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc4 C K K . A K 1302 1_555 E K K . A K 1304 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc5 E K K . A K 1304 1_555 F K K . A K 1305 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? metalc ? metalc6 E K K . A K 1304 1_555 F K K . A K 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.268 ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 290 n n N1 HN11 SPM sing 291 n n N1 HN12 SPM sing 292 n n C2 C3 SPM sing 293 n n C2 H21 SPM sing 294 n n C2 H22 SPM sing 295 n n C3 C4 SPM sing 296 n n C3 H31 SPM sing 297 n n C3 H32 SPM sing 298 n n C4 N5 SPM sing 299 n n C4 H41 SPM sing 300 n n C4 H42 SPM sing 301 n n N5 C6 SPM sing 302 n n N5 HN5 SPM sing 303 n n C6 C7 SPM sing 304 n n C6 H61 SPM sing 305 n n C6 H62 SPM sing 306 n n C7 C8 SPM sing 307 n n C7 H71 SPM sing 308 n n C7 H72 SPM sing 309 n n C8 C9 SPM sing 310 n n C8 H81 SPM sing 311 n n C8 H82 SPM sing 312 n n C9 N10 SPM sing 313 n n C9 H91 SPM sing 314 n n C9 H92 SPM sing 315 n n N10 C11 SPM sing 316 n n N10 HN0 SPM sing 317 n n C11 C12 SPM sing 318 n n C11 H111 SPM sing 319 n n C11 H112 SPM sing 320 n n C12 C13 SPM sing 321 n n C12 H121 SPM sing 322 n n C12 H122 SPM sing 323 n n C13 N14 SPM sing 324 n n C13 H131 SPM sing 325 n n C13 H132 SPM sing 326 n n N14 HN41 SPM sing 327 n n N14 HN42 SPM sing 328 n n # _atom_sites.entry_id 2WLK _atom_sites.fract_transf_matrix[1][1] 0.009455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 1302 1302 K K . D 2 K A 1 1303 1303 K K . E 2 K A 1 1304 1304 K K . F 2 K A 1 1305 1305 K K . G 3 CL A 1 1306 1306 CL CL . H 2 K A 1 1307 1307 K K . I 4 SPM B 1 1302 1302 SPM SPM . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . I 4 53.34 -53.475 184.056 0.5 45.93 ? N1 SPM 1302 B 1 HETATM 2 C C2 SPM . . . I 4 52.566 -54.019 185.158 0.5 49.53 ? C2 SPM 1302 B 1 HETATM 3 C C3 SPM . . . I 4 53.07 -53.502 186.507 0.5 49.69 ? C3 SPM 1302 B 1 HETATM 4 C C4 SPM . . . I 4 52.367 -54.161 187.675 0.5 53.57 ? C4 SPM 1302 B 1 HETATM 5 N N5 SPM . . . I 4 52.795 -53.57 188.956 0.5 58.26 ? N5 SPM 1302 B 1 HETATM 6 C C6 SPM . . . I 4 51.974 -53.94 190.162 0.5 58.54 ? C6 SPM 1302 B 1 HETATM 7 C C7 SPM . . . I 4 52.436 -53.223 191.443 0.5 60.35 ? C7 SPM 1302 B 1 HETATM 8 C C8 SPM . . . I 4 52.157 -53.972 192.767 0.5 60.23 ? C8 SPM 1302 B 1 HETATM 9 C C9 SPM . . . I 4 53.006 -53.472 193.953 0.5 59.75 ? C9 SPM 1302 B 1 HETATM 10 N N10 SPM . . . I 4 52.655 -54.037 195.266 0.5 59.38 ? N10 SPM 1302 B 1 HETATM 11 C C11 SPM . . . I 4 52.943 -53.35 196.534 0.5 57.45 ? C11 SPM 1302 B 1 HETATM 12 C C12 SPM . . . I 4 52.93 -54.216 197.798 0.5 56.1 ? C12 SPM 1302 B 1 HETATM 13 C C13 SPM . . . I 4 52.624 -53.383 199.046 0.5 56.8 ? C13 SPM 1302 B 1 HETATM 14 N N14 SPM . . . I 4 52.985 -54.073 200.282 0.5 57.19 ? N14 SPM 1302 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #