data_2WLL # _model_server_result.job_id IHwMXWRUjHCiDcYX-zDLcA _model_server_result.datetime_utc '2025-02-24 09:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1313}' # _entry.id 2WLL # _exptl.entry_id 2WLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WLL _cell.length_a 92.84 _cell.length_b 105.62 _cell.length_c 258.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 92.84 105.62 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 110 A THR 110 1_555 C MG MG . A MG 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A O THR 110 A THR 110 2_665 C MG MG . A MG 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 A O VAL 111 A VAL 111 2_665 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc4 A O VAL 111 A VAL 111 1_555 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc5 A O GLY 112 A GLY 112 2_665 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc6 A O GLY 112 A GLY 112 1_555 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc7 A O GLY 112 A GLY 112 2_665 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc8 A O GLY 112 A GLY 112 1_555 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc9 A O TYR 113 A TYR 113 2_665 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc10 A O TYR 113 A TYR 113 1_555 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc11 C MG MG . A MG 1310 1_555 B O THR 110 B THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc12 C MG MG . A MG 1310 1_555 B O THR 110 B THR 110 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc13 D MG MG . A MG 1311 1_555 G MG MG . B MG 1312 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc14 B O VAL 111 B VAL 111 1_555 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc15 B O VAL 111 B VAL 111 2_665 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc16 B O GLY 112 B GLY 112 1_555 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc17 B O GLY 112 B GLY 112 2_665 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc18 B O GLY 112 B GLY 112 1_555 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc19 B O GLY 112 B GLY 112 2_665 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc20 B O TYR 113 B TYR 113 2_665 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc21 B O TYR 113 B TYR 113 1_555 E K K . B K 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc22 E K K . B K 1310 1_555 F K K . B K 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc23 E K K . B K 1310 1_555 F K K . B K 1311 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 245 n n C1 O3P PLC sing 246 n n C1 H11 PLC sing 247 n n C1 H12 PLC sing 248 n n C2 C3 PLC sing 249 n n C2 O2 PLC sing 250 n n C2 H2 PLC sing 251 n n C3 O3 PLC sing 252 n n C3 H31 PLC sing 253 n n C3 H32 PLC sing 254 n n C4 C5 PLC sing 255 n n C4 O4P PLC sing 256 n n C4 H41 PLC sing 257 n n C4 H42 PLC sing 258 n n C5 N PLC sing 259 n n C5 H51 PLC sing 260 n n C5 H52 PLC sing 261 n n C6 N PLC sing 262 n n C6 H61 PLC sing 263 n n C6 H62 PLC sing 264 n n C6 H63 PLC sing 265 n n C7 N PLC sing 266 n n C7 H71 PLC sing 267 n n C7 H72 PLC sing 268 n n C7 H73 PLC sing 269 n n C8 N PLC sing 270 n n C8 H81 PLC sing 271 n n C8 H82 PLC sing 272 n n C8 H83 PLC sing 273 n n C' C1' PLC sing 274 n n C' O' PLC doub 275 n n C' O2 PLC sing 276 n n C1' C2' PLC sing 277 n n C1' "H1'1" PLC sing 278 n n C1' "H1'2" PLC sing 279 n n C2' C3' PLC sing 280 n n C2' "H2'1" PLC sing 281 n n C2' "H2'2" PLC sing 282 n n C3' C4' PLC sing 283 n n C3' "H3'1" PLC sing 284 n n C3' "H3'2" PLC sing 285 n n C4' C5' PLC sing 286 n n C4' "H4'1" PLC sing 287 n n C4' "H4'2" PLC sing 288 n n C5' C6' PLC sing 289 n n C5' "H5'1" PLC sing 290 n n C5' "H5'2" PLC sing 291 n n C6' C7' PLC sing 292 n n C6' "H6'1" PLC sing 293 n n C6' "H6'2" PLC sing 294 n n C7' C8' PLC sing 295 n n C7' "H7'1" PLC sing 296 n n C7' "H7'2" PLC sing 297 n n C8' C9' PLC sing 298 n n C8' "H8'1" PLC sing 299 n n C8' "H8'2" PLC sing 300 n n C9' CA' PLC sing 301 n n C9' "H9'1" PLC sing 302 n n C9' "H9'2" PLC sing 303 n n CA' CB' PLC sing 304 n n CA' "HT'1" PLC sing 305 n n CA' "HT'2" PLC sing 306 n n CB' "HE'1" PLC sing 307 n n CB' "HE'2" PLC sing 308 n n CB' "HE'3" PLC sing 309 n n CB C1B PLC sing 310 n n CB OB PLC doub 311 n n CB O3 PLC sing 312 n n C1B C2B PLC sing 313 n n C1B H1A1 PLC sing 314 n n C1B H1A2 PLC sing 315 n n C2B C3B PLC sing 316 n n C2B H2A1 PLC sing 317 n n C2B H2A2 PLC sing 318 n n C3B C4B PLC sing 319 n n C3B H3A1 PLC sing 320 n n C3B H3A2 PLC sing 321 n n C4B C5B PLC sing 322 n n C4B H4A1 PLC sing 323 n n C4B H4A2 PLC sing 324 n n C5B C6B PLC sing 325 n n C5B H5A1 PLC sing 326 n n C5B H5A2 PLC sing 327 n n C6B C7B PLC sing 328 n n C6B H6A1 PLC sing 329 n n C6B H6A2 PLC sing 330 n n C7B C8B PLC sing 331 n n C7B H7A1 PLC sing 332 n n C7B H7A2 PLC sing 333 n n C8B C9B PLC sing 334 n n C8B H8A1 PLC sing 335 n n C8B H8A2 PLC sing 336 n n C9B CAA PLC sing 337 n n C9B H9A1 PLC sing 338 n n C9B H9A2 PLC sing 339 n n CAA CBA PLC sing 340 n n CAA HTA1 PLC sing 341 n n CAA HTA2 PLC sing 342 n n CBA HEA1 PLC sing 343 n n CBA HEA2 PLC sing 344 n n CBA HEA3 PLC sing 345 n n O1P P PLC doub 346 n n O2P P PLC sing 347 n n O2P HOP2 PLC sing 348 n n O3P P PLC sing 349 n n O4P P PLC sing 350 n n # _atom_sites.entry_id 2WLL _atom_sites.fract_transf_matrix[1][1] 0.010771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1310 1310 MG MG . D 3 MG A 1 1311 1311 MG MG . E 4 K B 1 1310 1310 K K . F 4 K B 1 1311 1311 K K . G 3 MG B 1 1312 1312 MG MG . H 5 PLC B 1 1313 1313 PLC PLC . I 5 PLC B 1 1314 1314 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . H 5 43.736 36.886 169.178 1 104.11 ? C1 PLC 1313 B 1 HETATM 2 C C4 PLC . . . H 5 40.108 35.112 170.826 1 104.11 ? C4 PLC 1313 B 1 HETATM 3 C C5 PLC . . . H 5 38.609 34.991 170.377 1 104.11 ? C5 PLC 1313 B 1 HETATM 4 C C6 PLC . . . H 5 38.335 33.882 167.981 1 104.11 ? C6 PLC 1313 B 1 HETATM 5 C C7 PLC . . . H 5 38.451 32.672 169.969 1 104.11 ? C7 PLC 1313 B 1 HETATM 6 C C8 PLC . . . H 5 36.669 34.205 169.451 1 104.11 ? C8 PLC 1313 B 1 HETATM 7 O O1P PLC . . . H 5 42.153 38.203 172.455 1 104.11 ? O1P PLC 1313 B 1 HETATM 8 O O2P PLC . . . H 5 43.006 35.878 171.89 1 104.11 ? O2P PLC 1313 B 1 HETATM 9 O O3P PLC . . . H 5 42.732 37.53 169.941 1 104.11 ? O3P PLC 1313 B 1 HETATM 10 O O4P PLC . . . H 5 40.548 36.388 171.309 1 104.11 ? O4P PLC 1313 B 1 HETATM 11 N N PLC . . . H 5 38.107 33.964 169.425 1 104.11 ? N PLC 1313 B 1 HETATM 12 P P PLC . . . H 5 42.137 36.941 171.396 1 104.11 ? P PLC 1313 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #