data_2WM4 # _model_server_result.job_id otBcjPWcNZ8iKJT-T-00dw _model_server_result.datetime_utc '2024-11-02 19:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1429}' # _entry.id 2WM4 # _exptl.entry_id 2WM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.53 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,7S,11S)-3,7,11,15-tetramethylhexadecanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WM4 _cell.length_a 51.596 _cell.length_b 73.4 _cell.length_c 109.696 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 163 A ASN 156 1_555 D CA CA . A CA 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A OD2 ASP 165 A ASP 158 1_555 D CA CA . A CA 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A OD1 ASP 165 A ASP 158 1_555 D CA CA . A CA 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc4 A O GLN 167 A GLN 160 1_555 D CA CA . A CA 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 A SG CYS 386 A CYS 379 1_555 B FE HEM . A HEM 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C20 H40 O2' _chem_comp.formula_weight 312.53 _chem_comp.id VGJ _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,7S,11S)-3,7,11,15-tetramethylhexadecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 VGJ sing 458 n n C15 O2 VGJ doub 459 n n C15 C14 VGJ sing 460 n n C14 C13 VGJ sing 461 n n C13 C16 VGJ sing 462 n n C13 C12 VGJ sing 463 n n C12 C11 VGJ sing 464 n n C11 C10 VGJ sing 465 n n C10 C9 VGJ sing 466 n n C9 C17 VGJ sing 467 n n C9 C8 VGJ sing 468 n n C8 C7 VGJ sing 469 n n C7 C6 VGJ sing 470 n n C6 C5 VGJ sing 471 n n C5 C18 VGJ sing 472 n n C5 C4 VGJ sing 473 n n C4 C3 VGJ sing 474 n n C3 C2 VGJ sing 475 n n C2 C1 VGJ sing 476 n n C1 C19 VGJ sing 477 n n C1 C20 VGJ sing 478 n n O1 H1 VGJ sing 479 n n C14 H141 VGJ sing 480 n n C14 H142 VGJ sing 481 n n C13 H13 VGJ sing 482 n n C16 H161 VGJ sing 483 n n C16 H162 VGJ sing 484 n n C16 H163 VGJ sing 485 n n C12 H121 VGJ sing 486 n n C12 H122 VGJ sing 487 n n C11 H111 VGJ sing 488 n n C11 H112 VGJ sing 489 n n C10 H101 VGJ sing 490 n n C10 H102 VGJ sing 491 n n C9 H9 VGJ sing 492 n n C17 H171 VGJ sing 493 n n C17 H172 VGJ sing 494 n n C17 H173 VGJ sing 495 n n C8 H81C VGJ sing 496 n n C8 H82C VGJ sing 497 n n C7 H71C VGJ sing 498 n n C7 H72C VGJ sing 499 n n C6 H61C VGJ sing 500 n n C6 H62C VGJ sing 501 n n C5 H5 VGJ sing 502 n n C18 H181 VGJ sing 503 n n C18 H182 VGJ sing 504 n n C18 H183 VGJ sing 505 n n C4 H41C VGJ sing 506 n n C4 H42C VGJ sing 507 n n C3 H31C VGJ sing 508 n n C3 H32C VGJ sing 509 n n C2 H21C VGJ sing 510 n n C2 H22C VGJ sing 511 n n C1 HA VGJ sing 512 n n C19 H191 VGJ sing 513 n n C19 H192 VGJ sing 514 n n C19 H193 VGJ sing 515 n n C20 H201 VGJ sing 516 n n C20 H202 VGJ sing 517 n n C20 H203 VGJ sing 518 n n # _atom_sites.entry_id 2WM4 _atom_sites.fract_transf_matrix[1][1] 0.019381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 450 450 HEM HEM . C 3 VGJ A 1 1429 1429 VGJ VGJ . D 4 CA A 1 1430 1430 CA CA . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . E 5 HOH A 157 2157 2157 HOH HOH . E 5 HOH A 158 2158 2158 HOH HOH . E 5 HOH A 159 2159 2159 HOH HOH . E 5 HOH A 160 2160 2160 HOH HOH . E 5 HOH A 161 2161 2161 HOH HOH . E 5 HOH A 162 2162 2162 HOH HOH . E 5 HOH A 163 2163 2163 HOH HOH . E 5 HOH A 164 2164 2164 HOH HOH . E 5 HOH A 165 2165 2165 HOH HOH . E 5 HOH A 166 2166 2166 HOH HOH . E 5 HOH A 167 2167 2167 HOH HOH . E 5 HOH A 168 2168 2168 HOH HOH . E 5 HOH A 169 2169 2169 HOH HOH . E 5 HOH A 170 2170 2170 HOH HOH . E 5 HOH A 171 2171 2171 HOH HOH . E 5 HOH A 172 2172 2172 HOH HOH . E 5 HOH A 173 2173 2173 HOH HOH . E 5 HOH A 174 2174 2174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 VGJ . . . C 3 -1.373 8.762 -15.801 1 60.95 ? O1 VGJ 1429 A 1 HETATM 2 C C15 VGJ . . . C 3 -1.929 8.912 -14.665 1 60.99 ? C15 VGJ 1429 A 1 HETATM 3 O O2 VGJ . . . C 3 -1.406 9.684 -13.818 1 62.09 ? O2 VGJ 1429 A 1 HETATM 4 C C14 VGJ . . . C 3 -3.217 8.137 -14.278 1 59.44 ? C14 VGJ 1429 A 1 HETATM 5 C C13 VGJ . . . C 3 -4.528 8.94 -13.968 1 57.79 ? C13 VGJ 1429 A 1 HETATM 6 C C16 VGJ . . . C 3 -4.302 10.125 -13.017 1 57.63 ? C16 VGJ 1429 A 1 HETATM 7 C C12 VGJ . . . C 3 -5.745 8.071 -13.509 1 55.47 ? C12 VGJ 1429 A 1 HETATM 8 C C11 VGJ . . . C 3 -6.375 8.396 -12.115 1 50.63 ? C11 VGJ 1429 A 1 HETATM 9 C C10 VGJ . . . C 3 -7.864 8.052 -11.854 1 45.93 ? C10 VGJ 1429 A 1 HETATM 10 C C9 VGJ . . . C 3 -8.121 6.845 -10.921 1 42.43 ? C9 VGJ 1429 A 1 HETATM 11 C C17 VGJ . . . C 3 -7.995 7.182 -9.431 1 40.32 ? C17 VGJ 1429 A 1 HETATM 12 C C8 VGJ . . . C 3 -9.476 6.187 -11.239 1 39.47 ? C8 VGJ 1429 A 1 HETATM 13 C C7 VGJ . . . C 3 -9.818 4.844 -10.554 1 38.4 ? C7 VGJ 1429 A 1 HETATM 14 C C6 VGJ . . . C 3 -10.717 3.93 -11.431 1 38.31 ? C6 VGJ 1429 A 1 HETATM 15 C C5 VGJ . . . C 3 -11.97 3.278 -10.811 1 35.33 ? C5 VGJ 1429 A 1 HETATM 16 C C18 VGJ . . . C 3 -12.688 4.198 -9.849 1 35.22 ? C18 VGJ 1429 A 1 HETATM 17 C C4 VGJ . . . C 3 -13.071 2.942 -11.825 1 34.16 ? C4 VGJ 1429 A 1 HETATM 18 C C3 VGJ . . . C 3 -12.728 2.41 -13.216 1 30.1 ? C3 VGJ 1429 A 1 HETATM 19 C C2 VGJ . . . C 3 -13.937 1.667 -13.785 1 27.57 ? C2 VGJ 1429 A 1 HETATM 20 C C1 VGJ . . . C 3 -13.78 1.303 -15.242 1 25.5 ? C1 VGJ 1429 A 1 HETATM 21 C C19 VGJ . . . C 3 -14.059 2.496 -16.146 1 22.55 ? C19 VGJ 1429 A 1 HETATM 22 C C20 VGJ . . . C 3 -14.597 0.068 -15.624 1 23.85 ? C20 VGJ 1429 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #