data_2WMR # _model_server_result.job_id EX0pZM9zXhCqQEXfxg_Enw _model_server_result.datetime_utc '2024-11-22 01:42:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1271}' # _entry.id 2WMR # _exptl.entry_id 2WMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.89 _cell.angle_gamma 90 _cell.entry_id 2WMR _cell.length_a 44.78 _cell.length_b 65.25 _cell.length_c 54.24 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 N2 O S' _chem_comp.formula_weight 206.264 _chem_comp.id ZYR _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAL ZYR doub 376 n n CAL CAN ZYR sing 377 n n CAL NAH ZYR sing 378 n n CAN CAK ZYR sing 379 n y CAN CAM ZYR doub 380 n y CAK CAF ZYR sing 381 n n CAK CAJ ZYR doub 382 n y CAF CAD ZYR sing 383 n n CAD CAC ZYR sing 384 n n CAC CAE ZYR sing 385 n n CAE CAJ ZYR sing 386 n n CAJ SAI ZYR sing 387 n y SAI CAM ZYR sing 388 n y CAM NAG ZYR sing 389 n n NAG CAB ZYR doub 390 n n CAB NAH ZYR sing 391 n n NAH HAH ZYR sing 392 n n CAF HAF1 ZYR sing 393 n n CAF HAF2 ZYR sing 394 n n CAD HAD1 ZYR sing 395 n n CAD HAD2 ZYR sing 396 n n CAC HAC1 ZYR sing 397 n n CAC HAC2 ZYR sing 398 n n CAE HAE1 ZYR sing 399 n n CAE HAE2 ZYR sing 400 n n CAB HAB ZYR sing 401 n n # _atom_sites.entry_id 2WMR _atom_sites.fract_transf_matrix[1][1] 0.022331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZYR A 1 1271 1271 ZYR ZYR . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZYR . . . B 2 13.001 0.19 6.113 1 75.92 ? OAA ZYR 1271 A 1 HETATM 2 C CAL ZYR . . . B 2 12.062 -0.306 6.729 1 75.92 ? CAL ZYR 1271 A 1 HETATM 3 C CAN ZYR . . . B 2 12.251 -1.427 7.523 1 75.92 ? CAN ZYR 1271 A 1 HETATM 4 C CAK ZYR . . . B 2 13.43 -2.13 7.82 1 75.92 ? CAK ZYR 1271 A 1 HETATM 5 C CAF ZYR . . . B 2 14.802 -1.961 7.226 1 75.92 ? CAF ZYR 1271 A 1 HETATM 6 C CAD ZYR . . . B 2 16.081 -2.524 7.916 1 75.92 ? CAD ZYR 1271 A 1 HETATM 7 C CAC ZYR . . . B 2 15.759 -4.017 8.006 1 75.92 ? CAC ZYR 1271 A 1 HETATM 8 C CAE ZYR . . . B 2 14.506 -4.016 8.927 1 75.92 ? CAE ZYR 1271 A 1 HETATM 9 C CAJ ZYR . . . B 2 13.259 -3.26 8.566 1 75.92 ? CAJ ZYR 1271 A 1 HETATM 10 S SAI ZYR . . . B 2 11.673 -3.276 9.063 1 75.92 ? SAI ZYR 1271 A 1 HETATM 11 C CAM ZYR . . . B 2 11.142 -1.942 8.199 1 75.92 ? CAM ZYR 1271 A 1 HETATM 12 N NAG ZYR . . . B 2 9.933 -1.378 8.091 1 75.92 ? NAG ZYR 1271 A 1 HETATM 13 C CAB ZYR . . . B 2 9.738 -0.314 7.343 1 75.92 ? CAB ZYR 1271 A 1 HETATM 14 N NAH ZYR . . . B 2 10.795 0.257 6.637 1 75.92 ? NAH ZYR 1271 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #