data_2WMT # _model_server_result.job_id Pvk9W5DjQCzSctQGFPIzgw _model_server_result.datetime_utc '2025-03-05 18:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1271}' # _entry.id 2WMT # _exptl.entry_id 2WMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(methylsulfanyl)-5-(thiophen-2-ylmethyl)-1H-imidazol-4-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.18 _cell.angle_gamma 90 _cell.entry_id 2WMT _cell.length_a 44.83 _cell.length_b 65.15 _cell.length_c 53.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 N2 O S2' _chem_comp.formula_weight 226.318 _chem_comp.id ZYT _chem_comp.mon_nstd_flag . _chem_comp.name 2-(methylsulfanyl)-5-(thiophen-2-ylmethyl)-1H-imidazol-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA SAI ZYT sing 376 n n SAI CAL ZYT sing 377 n n CAL NAG ZYT sing 378 n y CAL NAH ZYT doub 379 n y NAG CAN ZYT sing 380 n y NAH CAM ZYT sing 381 n y CAM OAB ZYT sing 382 n n CAM CAN ZYT doub 383 n y CAN CAC ZYT sing 384 n n CAC CAK ZYT sing 385 n n CAK CAF ZYT doub 386 n y CAK SAJ ZYT sing 387 n y CAF CAD ZYT sing 388 n y CAD CAE ZYT doub 389 n y CAE SAJ ZYT sing 390 n y CAA HAA1 ZYT sing 391 n n CAA HAA2 ZYT sing 392 n n CAA HAA3 ZYT sing 393 n n NAG HAG ZYT sing 394 n n OAB HAB ZYT sing 395 n n CAC HAC1 ZYT sing 396 n n CAC HAC2 ZYT sing 397 n n CAF HAF ZYT sing 398 n n CAD HAD ZYT sing 399 n n CAE HAE ZYT sing 400 n n # _atom_sites.entry_id 2WMT _atom_sites.fract_transf_matrix[1][1] 0.022306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004815 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZYT A 1 1271 1271 ZYT ZYT . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA ZYT . . . B 2 8.514 0.549 9.179 1 121.02 ? CAA ZYT 1271 A 1 HETATM 2 S SAI ZYT . . . B 2 8.862 -0.996 8.388 1 121.02 ? SAI ZYT 1271 A 1 HETATM 3 C CAL ZYT . . . B 2 10.533 -1.011 7.907 1 121.02 ? CAL ZYT 1271 A 1 HETATM 4 N NAG ZYT . . . B 2 11.434 -1.921 8.279 1 121.02 ? NAG ZYT 1271 A 1 HETATM 5 N NAH ZYT . . . B 2 11.067 -0.112 7.097 1 121.02 ? NAH ZYT 1271 A 1 HETATM 6 C CAM ZYT . . . B 2 12.335 -0.458 6.968 1 121.02 ? CAM ZYT 1271 A 1 HETATM 7 O OAB ZYT . . . B 2 13.126 0.17 6.282 1 121.02 ? OAB ZYT 1271 A 1 HETATM 8 C CAN ZYT . . . B 2 12.594 -1.599 7.713 1 121.02 ? CAN ZYT 1271 A 1 HETATM 9 C CAC ZYT . . . B 2 13.843 -2.208 7.808 1 121.02 ? CAC ZYT 1271 A 1 HETATM 10 C CAK ZYT . . . B 2 15.024 -1.809 7.181 1 121.02 ? CAK ZYT 1271 A 1 HETATM 11 C CAF ZYT . . . B 2 15.216 -0.773 6.367 1 121.02 ? CAF ZYT 1271 A 1 HETATM 12 C CAD ZYT . . . B 2 16.478 -0.64 5.913 1 121.02 ? CAD ZYT 1271 A 1 HETATM 13 C CAE ZYT . . . B 2 17.353 -1.557 6.34 1 121.02 ? CAE ZYT 1271 A 1 HETATM 14 S SAJ ZYT . . . B 2 16.488 -2.596 7.348 1 121.02 ? SAJ ZYT 1271 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #