data_2WNA
#
_model_server_result.job_id            b-90syhQojy5hUOMqGTKYQ 
_model_server_result.datetime_utc      '2025-08-31 04:17:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wna 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    2WNA 
#
_exptl.entry_id    2WNA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WNA 
_cell.length_a            20.42 
_cell.length_b            42 
_cell.length_c            28.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WNA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 61.26 0 14.335 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O2G ZGU 1 A ZGU 1 1_555 A P ZBC 2 A ZBC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? 
covale ? covale2 A O2G ZBC 2 A ZBC 2 1_555 A P ZGU 3 A ZGU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
covale ? covale3 A O2G ZGU 3 A ZGU 3 1_555 A P ZCY 4 A ZCY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? 
covale ? covale4 A O2G ZCY 4 A ZCY 4 1_555 A P ZGU 5 A ZGU 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 ? 
covale ? covale5 A O2G ZGU 5 A ZGU 5 1_555 A P ZCY 6 A ZCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
metalc ? metalc1 D MG MG . A MG 1003 1_555 E O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc2 D MG MG . A MG 1003 1_555 E O HOH . A HOH 2006 4_576 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc3 D MG MG . A MG 1003 1_555 E O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc4 D MG MG . A MG 1003 1_555 E O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
hydrog WATSON-CRICK hydrog1 A N1 ZGU 1 A ZGU 1 1_555 A N3 ZCY 6 A ZCY 6 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 ZGU 1 A ZGU 1 1_555 A O2 ZCY 6 A ZCY 6 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 ZGU 1 A ZGU 1 1_555 A N4 ZCY 6 A ZCY 6 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 ZBC 2 A ZBC 2 1_555 A N1 ZGU 5 A ZGU 5 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 ZBC 2 A ZBC 2 1_555 A O6 ZGU 5 A ZGU 5 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 ZBC 2 A ZBC 2 1_555 A N2 ZGU 5 A ZGU 5 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 ZGU 3 A ZGU 3 1_555 A N3 ZCY 4 A ZCY 4 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 ZGU 3 A ZGU 3 1_555 A O2 ZCY 4 A ZCY 4 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 ZGU 3 A ZGU 3 1_555 A N4 ZCY 4 A ZCY 4 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 ZCY 4 A ZCY 4 1_555 A N1 ZGU 3 A ZGU 3 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N4 ZCY 4 A ZCY 4 1_555 A O6 ZGU 3 A ZGU 3 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O2 ZCY 4 A ZCY 4 1_555 A N2 ZGU 3 A ZGU 3 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 ZGU 5 A ZGU 5 1_555 A N3 ZBC 2 A ZBC 2 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N2 ZGU 5 A ZGU 5 1_555 A O2 ZBC 2 A ZBC 2 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O6 ZGU 5 A ZGU 5 1_555 A N4 ZBC 2 A ZBC 2 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 ZCY 6 A ZCY 6 1_555 A N1 ZGU 1 A ZGU 1 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N4 ZCY 6 A ZCY 6 1_555 A O6 ZGU 1 A ZGU 1 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O2 ZCY 6 A ZCY 6 1_555 A N2 ZGU 1 A ZGU 1 3_855 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2WNA 
_atom_sites.fract_transf_matrix[1][1]    0.048972 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NCO A 1 1001 1001 NCO NCO . 
C 2 NCO A 1 1002 1002 NCO NCO . 
D 3 MG A 1 1003 1003 MG MG . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
E 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH A 29 2029 2029 HOH HOH . 
E 4 HOH A 30 2030 2030 HOH HOH . 
E 4 HOH A 31 2031 2031 HOH HOH . 
E 4 HOH A 32 2032 2032 HOH HOH . 
E 4 HOH A 33 2033 2033 HOH HOH . 
E 4 HOH A 34 2034 2034 HOH HOH . 
E 4 HOH A 35 2035 2035 HOH HOH . 
E 4 HOH A 36 2036 2036 HOH HOH . 
E 4 HOH A 37 2037 2037 HOH HOH . 
E 4 HOH A 38 2038 2038 HOH HOH . 
E 4 HOH A 39 2039 2039 HOH HOH . 
E 4 HOH A 40 2040 2040 HOH HOH . 
E 4 HOH A 41 2041 2041 HOH HOH . 
E 4 HOH A 42 2042 2042 HOH HOH . 
E 4 HOH A 43 2043 2043 HOH HOH . 
E 4 HOH A 44 2044 2044 HOH HOH . 
E 4 HOH A 45 2045 2045 HOH HOH . 
E 4 HOH A 46 2046 2046 HOH HOH . 
E 4 HOH A 47 2047 2047 HOH HOH . 
E 4 HOH A 48 2048 2048 HOH HOH . 
E 4 HOH A 49 2049 2049 HOH HOH . 
E 4 HOH A 50 2050 2050 HOH HOH . 
E 4 HOH A 51 2051 2051 HOH HOH . 
E 4 HOH A 52 2052 2052 HOH HOH . 
E 4 HOH A 53 2053 2053 HOH HOH . 
E 4 HOH A 54 2054 2054 HOH HOH . 
E 4 HOH A 55 2055 2055 HOH HOH . 
E 4 HOH A 56 2056 2056 HOH HOH . 
E 4 HOH A 57 2057 2057 HOH HOH . 
E 4 HOH A 58 2058 2058 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               31.084 
_atom_site.Cartn_y               38.282 
_atom_site.Cartn_z               14.001 
_atom_site.occupancy             0.45 
_atom_site.B_iso_or_equiv        11.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1003 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#