data_2WNS # _model_server_result.job_id SpEDzWUYBBZ5t1xcsyqEbA _model_server_result.datetime_utc '2025-02-05 13:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":550}' # _entry.id 2WNS # _exptl.entry_id 2WNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "OROTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.4 _cell.angle_gamma 90 _cell.entry_id 2WNS _cell.length_a 64.4 _cell.length_b 43.6 _cell.length_c 71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H13 N2 O11 P' _chem_comp.formula_weight 368.191 _chem_comp.id OMP _chem_comp.mon_nstd_flag . _chem_comp.name "OROTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P OMP doub 237 n n P O2P OMP sing 238 n n P O3P OMP sing 239 n n P O5' OMP sing 240 n n O2P HOP2 OMP sing 241 n n O3P HOP3 OMP sing 242 n n O5' C5' OMP sing 243 n n C5' C4' OMP sing 244 n n C5' "H5'1" OMP sing 245 n n C5' "H5'2" OMP sing 246 n n C4' O4' OMP sing 247 n n C4' C3' OMP sing 248 n n C4' H4' OMP sing 249 n n O4' C1' OMP sing 250 n n C3' C2' OMP sing 251 n n C3' O3' OMP sing 252 n n C3' H3' OMP sing 253 n n O3' HO3' OMP sing 254 n n C2' C1' OMP sing 255 n n C2' O2' OMP sing 256 n n C2' H2' OMP sing 257 n n O2' HO2' OMP sing 258 n n C1' N1 OMP sing 259 n n C1' H1' OMP sing 260 n n N1 C2 OMP sing 261 n n N1 C6 OMP sing 262 n n C2 N3 OMP sing 263 n n C2 O2 OMP doub 264 n n N3 C4 OMP sing 265 n n N3 HN3 OMP sing 266 n n C4 C5 OMP sing 267 n n C4 O4 OMP doub 268 n n C5 C6 OMP doub 269 n n C5 H5 OMP sing 270 n n C6 C7 OMP sing 271 n n C7 O71 OMP doub 272 n n C7 O72 OMP sing 273 n n O72 HO7 OMP sing 274 n n # _atom_sites.entry_id 2WNS _atom_sites.fract_transf_matrix[1][1] 0.015528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00672 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OMP A 1 450 450 OMP OMP . D 2 OMP B 1 550 550 OMP OMP . E 3 CL B 1 1208 1208 CL CL . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2049 2049 HOH HOH . F 4 HOH A 50 2050 2050 HOH HOH . F 4 HOH A 51 2051 2051 HOH HOH . F 4 HOH A 52 2052 2052 HOH HOH . F 4 HOH A 53 2053 2053 HOH HOH . F 4 HOH A 54 2054 2054 HOH HOH . F 4 HOH A 55 2055 2055 HOH HOH . F 4 HOH A 56 2056 2056 HOH HOH . F 4 HOH A 57 2057 2057 HOH HOH . F 4 HOH A 58 2058 2058 HOH HOH . F 4 HOH A 59 2059 2059 HOH HOH . F 4 HOH A 60 2060 2060 HOH HOH . F 4 HOH A 61 2061 2061 HOH HOH . F 4 HOH A 62 2062 2062 HOH HOH . F 4 HOH A 63 2063 2063 HOH HOH . F 4 HOH A 64 2064 2064 HOH HOH . F 4 HOH A 65 2065 2065 HOH HOH . F 4 HOH A 66 2066 2066 HOH HOH . F 4 HOH A 67 2067 2067 HOH HOH . F 4 HOH A 68 2068 2068 HOH HOH . F 4 HOH A 69 2069 2069 HOH HOH . F 4 HOH A 70 2070 2070 HOH HOH . F 4 HOH A 71 2071 2071 HOH HOH . F 4 HOH A 72 2072 2072 HOH HOH . F 4 HOH A 73 2073 2073 HOH HOH . F 4 HOH A 74 2074 2074 HOH HOH . F 4 HOH A 75 2075 2075 HOH HOH . F 4 HOH A 76 2076 2076 HOH HOH . F 4 HOH A 77 2077 2077 HOH HOH . F 4 HOH A 78 2078 2078 HOH HOH . F 4 HOH A 79 2079 2079 HOH HOH . F 4 HOH A 80 2080 2080 HOH HOH . F 4 HOH A 81 2081 2081 HOH HOH . F 4 HOH A 82 2082 2082 HOH HOH . F 4 HOH A 83 2083 2083 HOH HOH . F 4 HOH A 84 2084 2084 HOH HOH . F 4 HOH A 85 2085 2085 HOH HOH . F 4 HOH A 86 2086 2086 HOH HOH . F 4 HOH A 87 2087 2087 HOH HOH . F 4 HOH A 88 2088 2088 HOH HOH . F 4 HOH A 89 2089 2089 HOH HOH . F 4 HOH A 90 2090 2090 HOH HOH . F 4 HOH A 91 2091 2091 HOH HOH . F 4 HOH A 92 2092 2092 HOH HOH . F 4 HOH A 93 2093 2093 HOH HOH . F 4 HOH A 94 2094 2094 HOH HOH . F 4 HOH A 95 2095 2095 HOH HOH . F 4 HOH A 96 2096 2096 HOH HOH . F 4 HOH A 97 2097 2097 HOH HOH . F 4 HOH A 98 2098 2098 HOH HOH . F 4 HOH A 99 2099 2099 HOH HOH . F 4 HOH A 100 2100 2100 HOH HOH . F 4 HOH A 101 2101 2101 HOH HOH . F 4 HOH A 102 2102 2102 HOH HOH . F 4 HOH A 103 2103 2103 HOH HOH . F 4 HOH A 104 2104 2104 HOH HOH . F 4 HOH A 105 2105 2105 HOH HOH . F 4 HOH A 106 2106 2106 HOH HOH . F 4 HOH A 107 2107 2107 HOH HOH . F 4 HOH A 108 2108 2108 HOH HOH . F 4 HOH A 109 2109 2109 HOH HOH . F 4 HOH A 110 2110 2110 HOH HOH . F 4 HOH A 111 2111 2111 HOH HOH . F 4 HOH A 112 2112 2112 HOH HOH . F 4 HOH A 113 2113 2113 HOH HOH . F 4 HOH A 114 2114 2114 HOH HOH . F 4 HOH A 115 2115 2115 HOH HOH . F 4 HOH A 116 2116 2116 HOH HOH . F 4 HOH A 117 2117 2117 HOH HOH . F 4 HOH A 118 2118 2118 HOH HOH . F 4 HOH A 119 2119 2119 HOH HOH . F 4 HOH A 120 2120 2120 HOH HOH . F 4 HOH A 121 2121 2121 HOH HOH . F 4 HOH A 122 2122 2122 HOH HOH . F 4 HOH A 123 2123 2123 HOH HOH . F 4 HOH A 124 2124 2124 HOH HOH . F 4 HOH A 125 2125 2125 HOH HOH . F 4 HOH A 126 2126 2126 HOH HOH . F 4 HOH A 127 2127 2127 HOH HOH . F 4 HOH A 128 2128 2128 HOH HOH . F 4 HOH A 129 2129 2129 HOH HOH . F 4 HOH A 130 2130 2130 HOH HOH . F 4 HOH A 131 2131 2131 HOH HOH . F 4 HOH A 132 2132 2132 HOH HOH . F 4 HOH A 133 2133 2133 HOH HOH . F 4 HOH A 134 2134 2134 HOH HOH . F 4 HOH A 135 2135 2135 HOH HOH . F 4 HOH A 136 2136 2136 HOH HOH . F 4 HOH A 137 2137 2137 HOH HOH . F 4 HOH A 138 2138 2138 HOH HOH . F 4 HOH A 139 2139 2139 HOH HOH . F 4 HOH A 140 2140 2140 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . G 4 HOH B 14 2014 2014 HOH HOH . G 4 HOH B 15 2015 2015 HOH HOH . G 4 HOH B 16 2016 2016 HOH HOH . G 4 HOH B 17 2017 2017 HOH HOH . G 4 HOH B 18 2018 2018 HOH HOH . G 4 HOH B 19 2019 2019 HOH HOH . G 4 HOH B 20 2020 2020 HOH HOH . G 4 HOH B 21 2021 2021 HOH HOH . G 4 HOH B 22 2022 2022 HOH HOH . G 4 HOH B 23 2023 2023 HOH HOH . G 4 HOH B 24 2024 2024 HOH HOH . G 4 HOH B 25 2025 2025 HOH HOH . G 4 HOH B 26 2026 2026 HOH HOH . G 4 HOH B 27 2027 2027 HOH HOH . G 4 HOH B 28 2028 2028 HOH HOH . G 4 HOH B 29 2029 2029 HOH HOH . G 4 HOH B 30 2030 2030 HOH HOH . G 4 HOH B 31 2031 2031 HOH HOH . G 4 HOH B 32 2032 2032 HOH HOH . G 4 HOH B 33 2033 2033 HOH HOH . G 4 HOH B 34 2034 2034 HOH HOH . G 4 HOH B 35 2035 2035 HOH HOH . G 4 HOH B 36 2036 2036 HOH HOH . G 4 HOH B 37 2037 2037 HOH HOH . G 4 HOH B 38 2038 2038 HOH HOH . G 4 HOH B 39 2039 2039 HOH HOH . G 4 HOH B 40 2040 2040 HOH HOH . G 4 HOH B 41 2041 2041 HOH HOH . G 4 HOH B 42 2042 2042 HOH HOH . G 4 HOH B 43 2043 2043 HOH HOH . G 4 HOH B 44 2044 2044 HOH HOH . G 4 HOH B 45 2045 2045 HOH HOH . G 4 HOH B 46 2046 2046 HOH HOH . G 4 HOH B 47 2047 2047 HOH HOH . G 4 HOH B 48 2048 2048 HOH HOH . G 4 HOH B 49 2049 2049 HOH HOH . G 4 HOH B 50 2050 2050 HOH HOH . G 4 HOH B 51 2051 2051 HOH HOH . G 4 HOH B 52 2052 2052 HOH HOH . G 4 HOH B 53 2053 2053 HOH HOH . G 4 HOH B 54 2054 2054 HOH HOH . G 4 HOH B 55 2055 2055 HOH HOH . G 4 HOH B 56 2056 2056 HOH HOH . G 4 HOH B 57 2057 2057 HOH HOH . G 4 HOH B 58 2058 2058 HOH HOH . G 4 HOH B 59 2059 2059 HOH HOH . G 4 HOH B 60 2060 2060 HOH HOH . G 4 HOH B 61 2061 2061 HOH HOH . G 4 HOH B 62 2062 2062 HOH HOH . G 4 HOH B 63 2063 2063 HOH HOH . G 4 HOH B 64 2064 2064 HOH HOH . G 4 HOH B 65 2065 2065 HOH HOH . G 4 HOH B 66 2066 2066 HOH HOH . G 4 HOH B 67 2067 2067 HOH HOH . G 4 HOH B 68 2068 2068 HOH HOH . G 4 HOH B 69 2069 2069 HOH HOH . G 4 HOH B 70 2070 2070 HOH HOH . G 4 HOH B 71 2071 2071 HOH HOH . G 4 HOH B 72 2072 2072 HOH HOH . G 4 HOH B 73 2073 2073 HOH HOH . G 4 HOH B 74 2074 2074 HOH HOH . G 4 HOH B 75 2075 2075 HOH HOH . G 4 HOH B 76 2076 2076 HOH HOH . G 4 HOH B 77 2077 2077 HOH HOH . G 4 HOH B 78 2078 2078 HOH HOH . G 4 HOH B 79 2079 2079 HOH HOH . G 4 HOH B 80 2080 2080 HOH HOH . G 4 HOH B 81 2081 2081 HOH HOH . G 4 HOH B 82 2082 2082 HOH HOH . G 4 HOH B 83 2083 2083 HOH HOH . G 4 HOH B 84 2084 2084 HOH HOH . G 4 HOH B 85 2085 2085 HOH HOH . G 4 HOH B 86 2086 2086 HOH HOH . G 4 HOH B 87 2087 2087 HOH HOH . G 4 HOH B 88 2088 2088 HOH HOH . G 4 HOH B 89 2089 2089 HOH HOH . G 4 HOH B 90 2090 2090 HOH HOH . G 4 HOH B 91 2091 2091 HOH HOH . G 4 HOH B 92 2092 2092 HOH HOH . G 4 HOH B 93 2093 2093 HOH HOH . G 4 HOH B 94 2094 2094 HOH HOH . G 4 HOH B 95 2095 2095 HOH HOH . G 4 HOH B 96 2096 2096 HOH HOH . G 4 HOH B 97 2097 2097 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P OMP . . . D 2 12.214 23.147 56.613 1 17.79 ? P OMP 550 B 1 HETATM 2 O O1P OMP . . . D 2 12.811 22.168 57.575 1 16.8 ? O1P OMP 550 B 1 HETATM 3 O O2P OMP . . . D 2 12.051 22.748 55.159 1 18.15 ? O2P OMP 550 B 1 HETATM 4 O O3P OMP . . . D 2 10.982 23.839 57.123 1 20.22 ? O3P OMP 550 B 1 HETATM 5 O O5' OMP . . . D 2 13.267 24.352 56.609 1 18.83 ? O5' OMP 550 B 1 HETATM 6 C C5' OMP . . . D 2 14.675 24.174 56.409 1 18.92 ? C5' OMP 550 B 1 HETATM 7 C C4' OMP . . . D 2 14.99 24.804 55.053 1 19.14 ? C4' OMP 550 B 1 HETATM 8 O O4' OMP . . . D 2 15.095 26.256 55.089 1 20.55 ? O4' OMP 550 B 1 HETATM 9 C C3' OMP . . . D 2 16.32 24.351 54.512 1 20.5 ? C3' OMP 550 B 1 HETATM 10 O O3' OMP . . . D 2 16.283 24.469 53.079 1 20.47 ? O3' OMP 550 B 1 HETATM 11 C C2' OMP . . . D 2 17.237 25.372 55.129 1 20.62 ? C2' OMP 550 B 1 HETATM 12 O O2' OMP . . . D 2 18.472 25.449 54.416 1 23.15 ? O2' OMP 550 B 1 HETATM 13 C C1' OMP . . . D 2 16.457 26.7 55.127 1 21.76 ? C1' OMP 550 B 1 HETATM 14 N N1 OMP . . . D 2 16.787 27.448 56.37 1 20.39 ? N1 OMP 550 B 1 HETATM 15 C C2 OMP . . . D 2 18.082 27.696 56.653 1 22.89 ? C2 OMP 550 B 1 HETATM 16 O O2 OMP . . . D 2 18.986 27.279 55.872 1 24.08 ? O2 OMP 550 B 1 HETATM 17 N N3 OMP . . . D 2 18.455 28.331 57.801 1 21.45 ? N3 OMP 550 B 1 HETATM 18 C C4 OMP . . . D 2 17.517 28.77 58.678 1 21.62 ? C4 OMP 550 B 1 HETATM 19 O O4 OMP . . . D 2 17.906 29.409 59.798 1 21.42 ? O4 OMP 550 B 1 HETATM 20 C C5 OMP . . . D 2 16.169 28.566 58.433 1 20.18 ? C5 OMP 550 B 1 HETATM 21 C C6 OMP . . . D 2 15.79 27.913 57.27 1 22.27 ? C6 OMP 550 B 1 HETATM 22 C C7 OMP . . . D 2 14.331 27.782 56.998 1 21.66 ? C7 OMP 550 B 1 HETATM 23 O O71 OMP . . . D 2 13.891 28.48 56.023 1 19.35 ? O71 OMP 550 B 1 HETATM 24 O O72 OMP . . . D 2 13.613 27.089 57.718 1 21.6 ? O72 OMP 550 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #