data_2WP0
#
_model_server_result.job_id            ShtrsePyl3tmT7Zo12P9LQ 
_model_server_result.datetime_utc      '2025-03-06 09:48:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    2WP0 
#
_exptl.entry_id    2WP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.55 
_cell.angle_gamma         90 
_cell.entry_id            2WP0 
_cell.length_a            126.56 
_cell.length_b            55.5 
_cell.length_c            96.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 107 A TYR 107 1_555 R NA NA . B NA 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc2 H NA NA . A NA 204 2_555 B OH TYR 107 B TYR 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc3 B OD1 ASP 156 B ASP 156 1_555 S NA NA . B NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? 
metalc ? metalc4 B OE1 GLU 167 B GLU 167 1_555 T NA NA . B NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? 
metalc ? metalc5 S NA NA . B NA 208 1_555 Z O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     2WP0 
_atom_sites.fract_transf_matrix[1][1]    0.007901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001047 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CL A 1 201 1182 CL CL . 
F 4 GOL A 1 202 1183 GOL GOL . 
G 3 CL A 1 203 1184 CL CL . 
H 5 NA A 1 204 1185 NA NA . 
I 5 NA A 1 205 1186 NA NA . 
J 5 NA A 1 206 1187 NA NA . 
K 3 CL A 1 207 1188 CL CL . 
L 3 CL B 1 201 1181 CL CL . 
M 5 NA B 1 202 1189 NA NA . 
N 4 GOL B 1 203 1181 GOL GOL . 
O 5 NA B 1 204 1182 NA NA . 
P 3 CL B 1 205 1183 CL CL . 
Q 5 NA B 1 206 1184 NA NA . 
R 5 NA B 1 207 1185 NA NA . 
S 5 NA B 1 208 1186 NA NA . 
T 5 NA B 1 209 1187 NA NA . 
U 3 CL B 1 210 1188 CL CL . 
V 5 NA B 1 211 1189 NA NA . 
W 5 NA B 1 212 1190 NA NA . 
X 6 ACT B 1 213 1432 ACT ACT . 
Y 7 HOH A 1 301 2015 HOH HOH . 
Y 7 HOH A 2 302 2024 HOH HOH . 
Y 7 HOH A 3 303 2013 HOH HOH . 
Y 7 HOH A 4 304 2025 HOH HOH . 
Y 7 HOH A 5 305 2007 HOH HOH . 
Y 7 HOH A 6 306 2001 HOH HOH . 
Y 7 HOH A 7 307 2035 HOH HOH . 
Y 7 HOH A 8 308 2012 HOH HOH . 
Y 7 HOH A 9 309 2023 HOH HOH . 
Y 7 HOH A 10 310 2006 HOH HOH . 
Y 7 HOH A 11 311 2033 HOH HOH . 
Y 7 HOH A 12 312 2034 HOH HOH . 
Y 7 HOH A 13 313 2019 HOH HOH . 
Y 7 HOH A 14 314 2020 HOH HOH . 
Y 7 HOH A 15 315 2009 HOH HOH . 
Y 7 HOH A 16 316 2030 HOH HOH . 
Y 7 HOH A 17 317 2021 HOH HOH . 
Y 7 HOH A 18 318 2008 HOH HOH . 
Y 7 HOH A 19 319 2041 HOH HOH . 
Y 7 HOH A 20 320 2038 HOH HOH . 
Y 7 HOH A 21 321 2026 HOH HOH . 
Y 7 HOH A 22 322 2011 HOH HOH . 
Y 7 HOH A 23 323 2039 HOH HOH . 
Y 7 HOH A 24 324 2005 HOH HOH . 
Y 7 HOH A 25 325 2028 HOH HOH . 
Y 7 HOH A 26 326 2003 HOH HOH . 
Y 7 HOH A 27 327 2032 HOH HOH . 
Y 7 HOH A 28 328 2029 HOH HOH . 
Y 7 HOH A 29 329 2027 HOH HOH . 
Y 7 HOH A 30 330 2043 HOH HOH . 
Y 7 HOH A 31 331 2014 HOH HOH . 
Y 7 HOH A 32 332 2040 HOH HOH . 
Y 7 HOH A 33 333 2037 HOH HOH . 
Y 7 HOH A 34 334 2042 HOH HOH . 
Y 7 HOH A 35 335 2036 HOH HOH . 
Y 7 HOH A 36 336 2004 HOH HOH . 
Y 7 HOH A 37 337 2022 HOH HOH . 
Y 7 HOH A 38 338 2002 HOH HOH . 
Y 7 HOH A 39 339 2031 HOH HOH . 
Y 7 HOH A 40 340 2010 HOH HOH . 
Y 7 HOH A 41 341 2018 HOH HOH . 
Y 7 HOH A 42 342 2016 HOH HOH . 
Y 7 HOH A 43 343 2017 HOH HOH . 
Z 7 HOH B 1 301 2005 HOH HOH . 
Z 7 HOH B 2 302 2011 HOH HOH . 
Z 7 HOH B 3 303 2006 HOH HOH . 
Z 7 HOH B 4 304 2031 HOH HOH . 
Z 7 HOH B 5 305 2028 HOH HOH . 
Z 7 HOH B 6 306 2010 HOH HOH . 
Z 7 HOH B 7 307 2039 HOH HOH . 
Z 7 HOH B 8 308 2003 HOH HOH . 
Z 7 HOH B 9 309 2021 HOH HOH . 
Z 7 HOH B 10 310 2020 HOH HOH . 
Z 7 HOH B 11 311 2024 HOH HOH . 
Z 7 HOH B 12 312 2017 HOH HOH . 
Z 7 HOH B 13 313 2032 HOH HOH . 
Z 7 HOH B 14 314 2004 HOH HOH . 
Z 7 HOH B 15 315 2013 HOH HOH . 
Z 7 HOH B 16 316 2030 HOH HOH . 
Z 7 HOH B 17 317 2036 HOH HOH . 
Z 7 HOH B 18 318 2007 HOH HOH . 
Z 7 HOH B 19 319 2019 HOH HOH . 
Z 7 HOH B 20 320 2018 HOH HOH . 
Z 7 HOH B 21 321 2022 HOH HOH . 
Z 7 HOH B 22 322 2035 HOH HOH . 
Z 7 HOH B 23 323 2008 HOH HOH . 
Z 7 HOH B 24 324 2037 HOH HOH . 
Z 7 HOH B 25 325 2015 HOH HOH . 
Z 7 HOH B 26 326 2040 HOH HOH . 
Z 7 HOH B 27 327 2042 HOH HOH . 
Z 7 HOH B 28 328 2014 HOH HOH . 
Z 7 HOH B 29 329 2001 HOH HOH . 
Z 7 HOH B 30 330 2025 HOH HOH . 
Z 7 HOH B 31 331 2033 HOH HOH . 
Z 7 HOH B 32 332 2041 HOH HOH . 
Z 7 HOH B 33 333 2002 HOH HOH . 
Z 7 HOH B 34 334 2016 HOH HOH . 
Z 7 HOH B 35 335 2027 HOH HOH . 
Z 7 HOH B 36 336 2029 HOH HOH . 
Z 7 HOH B 37 337 2026 HOH HOH . 
Z 7 HOH B 38 338 2034 HOH HOH . 
Z 7 HOH B 39 339 2043 HOH HOH . 
Z 7 HOH B 40 340 2038 HOH HOH . 
Z 7 HOH B 41 341 2023 HOH HOH . 
Z 7 HOH B 42 342 2012 HOH HOH . 
Z 7 HOH B 43 343 2009 HOH HOH . 
AA 7 HOH C 1 201 2002 HOH HOH . 
AA 7 HOH C 2 202 2001 HOH HOH . 
AA 7 HOH C 3 203 2010 HOH HOH . 
AA 7 HOH C 4 204 2005 HOH HOH . 
AA 7 HOH C 5 205 2006 HOH HOH . 
AA 7 HOH C 6 206 2004 HOH HOH . 
AA 7 HOH C 7 207 2007 HOH HOH . 
AA 7 HOH C 8 208 2009 HOH HOH . 
AA 7 HOH C 9 209 2008 HOH HOH . 
AA 7 HOH C 10 210 2003 HOH HOH . 
BA 7 HOH D 1 201 2008 HOH HOH . 
BA 7 HOH D 2 202 2011 HOH HOH . 
BA 7 HOH D 3 203 2004 HOH HOH . 
BA 7 HOH D 4 204 2010 HOH HOH . 
BA 7 HOH D 5 205 2005 HOH HOH . 
BA 7 HOH D 6 206 2006 HOH HOH . 
BA 7 HOH D 7 207 2003 HOH HOH . 
BA 7 HOH D 8 208 2001 HOH HOH . 
BA 7 HOH D 9 209 2007 HOH HOH . 
BA 7 HOH D 10 210 2009 HOH HOH . 
BA 7 HOH D 11 211 2002 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 7.27 1.423 7.52 1 53.93 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . F 4 6.418 1.249 6.404 1 53.93 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . F 4 8.376 0.362 7.516 1 53.93 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . F 4 7.809 -0.894 7.798 1 53.93 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . F 4 9.45 0.695 8.557 1 53.93 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . F 4 9.701 -0.397 9.413 1 53.93 ? O3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#