data_2WP0 # _model_server_result.job_id c9hsp9XlAMjxQg77D1ZHxA _model_server_result.datetime_utc '2025-03-06 10:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":211}' # _entry.id 2WP0 # _exptl.entry_id 2WP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.55 _cell.angle_gamma 90 _cell.entry_id 2WP0 _cell.length_a 126.56 _cell.length_b 55.5 _cell.length_c 96.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 M N N ? 5 O N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 107 A TYR 107 1_555 R NA NA . B NA 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc2 H NA NA . A NA 204 2_555 B OH TYR 107 B TYR 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc3 B OD1 ASP 156 B ASP 156 1_555 S NA NA . B NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc4 B OE1 GLU 167 B GLU 167 1_555 T NA NA . B NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? metalc ? metalc5 S NA NA . B NA 208 1_555 Z O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WP0 _atom_sites.fract_transf_matrix[1][1] 0.007901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL A 1 201 1182 CL CL . F 4 GOL A 1 202 1183 GOL GOL . G 3 CL A 1 203 1184 CL CL . H 5 NA A 1 204 1185 NA NA . I 5 NA A 1 205 1186 NA NA . J 5 NA A 1 206 1187 NA NA . K 3 CL A 1 207 1188 CL CL . L 3 CL B 1 201 1181 CL CL . M 5 NA B 1 202 1189 NA NA . N 4 GOL B 1 203 1181 GOL GOL . O 5 NA B 1 204 1182 NA NA . P 3 CL B 1 205 1183 CL CL . Q 5 NA B 1 206 1184 NA NA . R 5 NA B 1 207 1185 NA NA . S 5 NA B 1 208 1186 NA NA . T 5 NA B 1 209 1187 NA NA . U 3 CL B 1 210 1188 CL CL . V 5 NA B 1 211 1189 NA NA . W 5 NA B 1 212 1190 NA NA . X 6 ACT B 1 213 1432 ACT ACT . Y 7 HOH A 1 301 2015 HOH HOH . Y 7 HOH A 2 302 2024 HOH HOH . Y 7 HOH A 3 303 2013 HOH HOH . Y 7 HOH A 4 304 2025 HOH HOH . Y 7 HOH A 5 305 2007 HOH HOH . Y 7 HOH A 6 306 2001 HOH HOH . Y 7 HOH A 7 307 2035 HOH HOH . Y 7 HOH A 8 308 2012 HOH HOH . Y 7 HOH A 9 309 2023 HOH HOH . Y 7 HOH A 10 310 2006 HOH HOH . Y 7 HOH A 11 311 2033 HOH HOH . Y 7 HOH A 12 312 2034 HOH HOH . Y 7 HOH A 13 313 2019 HOH HOH . Y 7 HOH A 14 314 2020 HOH HOH . Y 7 HOH A 15 315 2009 HOH HOH . Y 7 HOH A 16 316 2030 HOH HOH . Y 7 HOH A 17 317 2021 HOH HOH . Y 7 HOH A 18 318 2008 HOH HOH . Y 7 HOH A 19 319 2041 HOH HOH . Y 7 HOH A 20 320 2038 HOH HOH . Y 7 HOH A 21 321 2026 HOH HOH . Y 7 HOH A 22 322 2011 HOH HOH . Y 7 HOH A 23 323 2039 HOH HOH . Y 7 HOH A 24 324 2005 HOH HOH . Y 7 HOH A 25 325 2028 HOH HOH . Y 7 HOH A 26 326 2003 HOH HOH . Y 7 HOH A 27 327 2032 HOH HOH . Y 7 HOH A 28 328 2029 HOH HOH . Y 7 HOH A 29 329 2027 HOH HOH . Y 7 HOH A 30 330 2043 HOH HOH . Y 7 HOH A 31 331 2014 HOH HOH . Y 7 HOH A 32 332 2040 HOH HOH . Y 7 HOH A 33 333 2037 HOH HOH . Y 7 HOH A 34 334 2042 HOH HOH . Y 7 HOH A 35 335 2036 HOH HOH . Y 7 HOH A 36 336 2004 HOH HOH . Y 7 HOH A 37 337 2022 HOH HOH . Y 7 HOH A 38 338 2002 HOH HOH . Y 7 HOH A 39 339 2031 HOH HOH . Y 7 HOH A 40 340 2010 HOH HOH . Y 7 HOH A 41 341 2018 HOH HOH . Y 7 HOH A 42 342 2016 HOH HOH . Y 7 HOH A 43 343 2017 HOH HOH . Z 7 HOH B 1 301 2005 HOH HOH . Z 7 HOH B 2 302 2011 HOH HOH . Z 7 HOH B 3 303 2006 HOH HOH . Z 7 HOH B 4 304 2031 HOH HOH . Z 7 HOH B 5 305 2028 HOH HOH . Z 7 HOH B 6 306 2010 HOH HOH . Z 7 HOH B 7 307 2039 HOH HOH . Z 7 HOH B 8 308 2003 HOH HOH . Z 7 HOH B 9 309 2021 HOH HOH . Z 7 HOH B 10 310 2020 HOH HOH . Z 7 HOH B 11 311 2024 HOH HOH . Z 7 HOH B 12 312 2017 HOH HOH . Z 7 HOH B 13 313 2032 HOH HOH . Z 7 HOH B 14 314 2004 HOH HOH . Z 7 HOH B 15 315 2013 HOH HOH . Z 7 HOH B 16 316 2030 HOH HOH . Z 7 HOH B 17 317 2036 HOH HOH . Z 7 HOH B 18 318 2007 HOH HOH . Z 7 HOH B 19 319 2019 HOH HOH . Z 7 HOH B 20 320 2018 HOH HOH . Z 7 HOH B 21 321 2022 HOH HOH . Z 7 HOH B 22 322 2035 HOH HOH . Z 7 HOH B 23 323 2008 HOH HOH . Z 7 HOH B 24 324 2037 HOH HOH . Z 7 HOH B 25 325 2015 HOH HOH . Z 7 HOH B 26 326 2040 HOH HOH . Z 7 HOH B 27 327 2042 HOH HOH . Z 7 HOH B 28 328 2014 HOH HOH . Z 7 HOH B 29 329 2001 HOH HOH . Z 7 HOH B 30 330 2025 HOH HOH . Z 7 HOH B 31 331 2033 HOH HOH . Z 7 HOH B 32 332 2041 HOH HOH . Z 7 HOH B 33 333 2002 HOH HOH . Z 7 HOH B 34 334 2016 HOH HOH . Z 7 HOH B 35 335 2027 HOH HOH . Z 7 HOH B 36 336 2029 HOH HOH . Z 7 HOH B 37 337 2026 HOH HOH . Z 7 HOH B 38 338 2034 HOH HOH . Z 7 HOH B 39 339 2043 HOH HOH . Z 7 HOH B 40 340 2038 HOH HOH . Z 7 HOH B 41 341 2023 HOH HOH . Z 7 HOH B 42 342 2012 HOH HOH . Z 7 HOH B 43 343 2009 HOH HOH . AA 7 HOH C 1 201 2002 HOH HOH . AA 7 HOH C 2 202 2001 HOH HOH . AA 7 HOH C 3 203 2010 HOH HOH . AA 7 HOH C 4 204 2005 HOH HOH . AA 7 HOH C 5 205 2006 HOH HOH . AA 7 HOH C 6 206 2004 HOH HOH . AA 7 HOH C 7 207 2007 HOH HOH . AA 7 HOH C 8 208 2009 HOH HOH . AA 7 HOH C 9 209 2008 HOH HOH . AA 7 HOH C 10 210 2003 HOH HOH . BA 7 HOH D 1 201 2008 HOH HOH . BA 7 HOH D 2 202 2011 HOH HOH . BA 7 HOH D 3 203 2004 HOH HOH . BA 7 HOH D 4 204 2010 HOH HOH . BA 7 HOH D 5 205 2005 HOH HOH . BA 7 HOH D 6 206 2006 HOH HOH . BA 7 HOH D 7 207 2003 HOH HOH . BA 7 HOH D 8 208 2001 HOH HOH . BA 7 HOH D 9 209 2007 HOH HOH . BA 7 HOH D 10 210 2009 HOH HOH . BA 7 HOH D 11 211 2002 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 5 _atom_site.Cartn_x 28.349 _atom_site.Cartn_y -3.513 _atom_site.Cartn_z -17.199 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 211 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #