data_2WQE # _model_server_result.job_id KWNt0Eikvhkf5y0wSnbzWw _model_server_result.datetime_utc '2024-11-14 17:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1389}' # _entry.id 2WQE # _exptl.entry_id 2WQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WQE _cell.length_a 85.575 _cell.length_b 85.575 _cell.length_c 79.949 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2WQE _atom_sites.fract_transf_matrix[1][1] 0.011686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1389 1389 ADP ADP . C 2 ADP A 1 1390 1390 ADP ADP . D 2 ADP A 1 1391 1391 ADP ADP . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -18.021 9.762 -7.927 1 80.65 ? PB ADP 1389 A 1 HETATM 2 O O1B ADP . . . B 2 -18.341 8.496 -7.15 1 52.19 ? O1B ADP 1389 A 1 HETATM 3 O O2B ADP . . . B 2 -17.026 10.677 -7.249 1 64.94 ? O2B ADP 1389 A 1 HETATM 4 O O3B ADP . . . B 2 -17.761 9.513 -9.394 1 71.67 ? O3B ADP 1389 A 1 HETATM 5 P PA ADP . . . B 2 -20.504 10.568 -6.851 1 54.28 ? PA ADP 1389 A 1 HETATM 6 O O1A ADP . . . B 2 -20.89 9.114 -6.692 1 47.43 ? O1A ADP 1389 A 1 HETATM 7 O O2A ADP . . . B 2 -20 11.419 -5.709 1 46.12 ? O2A ADP 1389 A 1 HETATM 8 O O3A ADP . . . B 2 -19.375 10.643 -7.998 1 59.7 ? O3A ADP 1389 A 1 HETATM 9 O O5' ADP . . . B 2 -21.788 11.271 -7.521 1 50.3 ? O5' ADP 1389 A 1 HETATM 10 C C5' ADP . . . B 2 -21.699 11.946 -8.765 1 44.37 ? C5' ADP 1389 A 1 HETATM 11 C C4' ADP . . . B 2 -22.625 13.137 -8.698 1 42.9 ? C4' ADP 1389 A 1 HETATM 12 O O4' ADP . . . B 2 -23.619 12.927 -7.687 1 42.92 ? O4' ADP 1389 A 1 HETATM 13 C C3' ADP . . . B 2 -21.868 14.371 -8.263 1 39.98 ? C3' ADP 1389 A 1 HETATM 14 O O3' ADP . . . B 2 -21.315 15.049 -9.391 1 42.59 ? O3' ADP 1389 A 1 HETATM 15 C C2' ADP . . . B 2 -22.923 15.185 -7.551 1 38.5 ? C2' ADP 1389 A 1 HETATM 16 O O2' ADP . . . B 2 -23.572 16.055 -8.48 1 47.38 ? O2' ADP 1389 A 1 HETATM 17 C C1' ADP . . . B 2 -23.946 14.177 -7.065 1 37.49 ? C1' ADP 1389 A 1 HETATM 18 N N9 ADP . . . B 2 -23.787 14.109 -5.595 1 37.39 ? N9 ADP 1389 A 1 HETATM 19 C C8 ADP . . . B 2 -23.02 13.233 -4.916 1 33.96 ? C8 ADP 1389 A 1 HETATM 20 N N7 ADP . . . B 2 -23.093 13.454 -3.575 1 35.5 ? N7 ADP 1389 A 1 HETATM 21 C C5 ADP . . . B 2 -23.917 14.502 -3.381 1 33.34 ? C5 ADP 1389 A 1 HETATM 22 C C6 ADP . . . B 2 -24.431 15.267 -2.218 1 28.25 ? C6 ADP 1389 A 1 HETATM 23 N N6 ADP . . . B 2 -24.077 14.965 -0.95 1 28.33 ? N6 ADP 1389 A 1 HETATM 24 N N1 ADP . . . B 2 -25.274 16.293 -2.474 1 32.09 ? N1 ADP 1389 A 1 HETATM 25 C C2 ADP . . . B 2 -25.648 16.631 -3.725 1 33.55 ? C2 ADP 1389 A 1 HETATM 26 N N3 ADP . . . B 2 -25.215 15.987 -4.826 1 35.36 ? N3 ADP 1389 A 1 HETATM 27 C C4 ADP . . . B 2 -24.365 14.934 -4.721 1 35.65 ? C4 ADP 1389 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #