data_2WQH # _model_server_result.job_id lMRedKKc_avj3YexCWdhuA _model_server_result.datetime_utc '2024-11-05 00:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1109}' # _entry.id 2WQH # _exptl.entry_id 2WQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WQH _cell.length_a 62.284 _cell.length_b 62.284 _cell.length_c 120.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 60.184 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 207 n n C1 H1C1 MRD sing 208 n n C1 H1C2 MRD sing 209 n n C1 H1C3 MRD sing 210 n n C2 O2 MRD sing 211 n n C2 CM MRD sing 212 n n C2 C3 MRD sing 213 n n O2 H2 MRD sing 214 n n CM HMC1 MRD sing 215 n n CM HMC2 MRD sing 216 n n CM HMC3 MRD sing 217 n n C3 C4 MRD sing 218 n n C3 H3C1 MRD sing 219 n n C3 H3C2 MRD sing 220 n n C4 O4 MRD sing 221 n n C4 C5 MRD sing 222 n n C4 H4 MRD sing 223 n n O4 HA MRD sing 224 n n C5 H5C1 MRD sing 225 n n C5 H5C2 MRD sing 226 n n C5 H5C3 MRD sing 227 n n # _atom_sites.entry_id 2WQH _atom_sites.fract_transf_matrix[1][1] 0.016055 _atom_sites.fract_transf_matrix[1][2] 0.00927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD A 1 1109 1109 MRD MRD . C 3 MPD A 1 1110 1110 MPD MPD . D 4 EDO A 1 1111 1111 EDO EDO . E 4 EDO A 1 1112 1112 EDO EDO . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . B 2 -12.263 56.064 17.059 1 79.62 ? C1 MRD 1109 A 1 HETATM 2 C C2 MRD . . . B 2 -11.322 55.18 17.883 1 79.83 ? C2 MRD 1109 A 1 HETATM 3 O O2 MRD . . . B 2 -10.436 56.042 18.653 1 79.5 ? O2 MRD 1109 A 1 HETATM 4 C CM MRD . . . B 2 -10.436 54.368 16.953 1 79.37 ? CM MRD 1109 A 1 HETATM 5 C C3 MRD . . . B 2 -12.096 54.277 18.858 1 79.53 ? C3 MRD 1109 A 1 HETATM 6 C C4 MRD . . . B 2 -12.632 52.968 18.261 1 79.1 ? C4 MRD 1109 A 1 HETATM 7 O O4 MRD . . . B 2 -13.963 53.156 17.822 1 78.93 ? O4 MRD 1109 A 1 HETATM 8 C C5 MRD . . . B 2 -12.565 51.81 19.255 1 77.83 ? C5 MRD 1109 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #