data_2WQO # _model_server_result.job_id IhZQ2vvuqBhWYBL3ZYSHkw _model_server_result.datetime_utc '2025-03-15 17:51:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1280}' # _entry.id 2WQO # _exptl.entry_id 2WQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-AMINO-5-(3,4,5-TRIMETHOXYPHENYL)PYRIDIN-3-YL]BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.09 _cell.angle_gamma 90 _cell.entry_id 2WQO _cell.length_a 100.43 _cell.length_b 56.84 _cell.length_c 73.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 N2 O5' _chem_comp.formula_weight 380.394 _chem_comp.id VGK _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-AMINO-5-(3,4,5-TRIMETHOXYPHENYL)PYRIDIN-3-YL]BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 VGK sing 376 n n O02 C03 VGK sing 377 n n C03 C04 VGK sing 378 n y C03 C26 VGK doub 379 n y C04 C05 VGK doub 380 n y C05 C06 VGK sing 381 n y C05 C22 VGK sing 382 n y C06 C07 VGK sing 383 n y C06 C21 VGK doub 384 n y C07 N08 VGK doub 385 n y N08 C09 VGK sing 386 n y C09 N10 VGK sing 387 n n C09 C11 VGK doub 388 n y C11 C12 VGK sing 389 n y C11 C21 VGK sing 390 n y C12 C13 VGK sing 391 n y C12 C20 VGK doub 392 n y C13 C14 VGK doub 393 n y C14 C15 VGK sing 394 n y C15 C16 VGK sing 395 n n C15 C19 VGK doub 396 n y C16 O17 VGK doub 397 n n C16 O18 VGK sing 398 n n C19 C20 VGK sing 399 n y C22 C23 VGK doub 400 n y C23 O24 VGK sing 401 n n C23 C26 VGK sing 402 n y O24 C25 VGK sing 403 n n C26 O27 VGK sing 404 n n O27 C28 VGK sing 405 n n C01 H011 VGK sing 406 n n C01 H012 VGK sing 407 n n C01 H013 VGK sing 408 n n C04 H04 VGK sing 409 n n C22 H22 VGK sing 410 n n C07 H07 VGK sing 411 n n C21 H21 VGK sing 412 n n N10 H101 VGK sing 413 n n N10 H102 VGK sing 414 n n C13 H13 VGK sing 415 n n C20 H20 VGK sing 416 n n C14 H14 VGK sing 417 n n C19 H19 VGK sing 418 n n O18 H18 VGK sing 419 n n C25 H251 VGK sing 420 n n C25 H252 VGK sing 421 n n C25 H253 VGK sing 422 n n C28 H281 VGK sing 423 n n C28 H282 VGK sing 424 n n C28 H283 VGK sing 425 n n # _atom_sites.entry_id 2WQO _atom_sites.fract_transf_matrix[1][1] 0.009957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VGK A 1 1280 1280 VGK VGK . C 3 CL A 1 1281 1281 CL CL . D 3 CL A 1 1282 1282 CL CL . E 3 CL A 1 1283 1283 CL CL . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2049 2049 HOH HOH . F 4 HOH A 50 2050 2050 HOH HOH . F 4 HOH A 51 2051 2051 HOH HOH . F 4 HOH A 52 2052 2052 HOH HOH . F 4 HOH A 53 2053 2053 HOH HOH . F 4 HOH A 54 2054 2054 HOH HOH . F 4 HOH A 55 2055 2055 HOH HOH . F 4 HOH A 56 2056 2056 HOH HOH . F 4 HOH A 57 2057 2057 HOH HOH . F 4 HOH A 58 2058 2058 HOH HOH . F 4 HOH A 59 2059 2059 HOH HOH . F 4 HOH A 60 2060 2060 HOH HOH . F 4 HOH A 61 2061 2061 HOH HOH . F 4 HOH A 62 2062 2062 HOH HOH . F 4 HOH A 63 2063 2063 HOH HOH . F 4 HOH A 64 2064 2064 HOH HOH . F 4 HOH A 65 2065 2065 HOH HOH . F 4 HOH A 66 2066 2066 HOH HOH . F 4 HOH A 67 2067 2067 HOH HOH . F 4 HOH A 68 2068 2068 HOH HOH . F 4 HOH A 69 2069 2069 HOH HOH . F 4 HOH A 70 2070 2070 HOH HOH . F 4 HOH A 71 2071 2071 HOH HOH . F 4 HOH A 72 2072 2072 HOH HOH . F 4 HOH A 73 2073 2073 HOH HOH . F 4 HOH A 74 2074 2074 HOH HOH . F 4 HOH A 75 2075 2075 HOH HOH . F 4 HOH A 76 2076 2076 HOH HOH . F 4 HOH A 77 2077 2077 HOH HOH . F 4 HOH A 78 2078 2078 HOH HOH . F 4 HOH A 79 2079 2079 HOH HOH . F 4 HOH A 80 2080 2080 HOH HOH . F 4 HOH A 81 2081 2081 HOH HOH . F 4 HOH A 82 2082 2082 HOH HOH . F 4 HOH A 83 2083 2083 HOH HOH . F 4 HOH A 84 2084 2084 HOH HOH . F 4 HOH A 85 2085 2085 HOH HOH . F 4 HOH A 86 2086 2086 HOH HOH . F 4 HOH A 87 2087 2087 HOH HOH . F 4 HOH A 88 2088 2088 HOH HOH . F 4 HOH A 89 2089 2089 HOH HOH . F 4 HOH A 90 2090 2090 HOH HOH . F 4 HOH A 91 2091 2091 HOH HOH . F 4 HOH A 92 2092 2092 HOH HOH . F 4 HOH A 93 2093 2093 HOH HOH . F 4 HOH A 94 2094 2094 HOH HOH . F 4 HOH A 95 2095 2095 HOH HOH . F 4 HOH A 96 2096 2096 HOH HOH . F 4 HOH A 97 2097 2097 HOH HOH . F 4 HOH A 98 2098 2098 HOH HOH . F 4 HOH A 99 2099 2099 HOH HOH . F 4 HOH A 100 2100 2100 HOH HOH . F 4 HOH A 101 2101 2101 HOH HOH . F 4 HOH A 102 2102 2102 HOH HOH . F 4 HOH A 103 2103 2103 HOH HOH . F 4 HOH A 104 2104 2104 HOH HOH . F 4 HOH A 105 2105 2105 HOH HOH . F 4 HOH A 106 2106 2106 HOH HOH . F 4 HOH A 107 2107 2107 HOH HOH . F 4 HOH A 108 2108 2108 HOH HOH . F 4 HOH A 109 2109 2109 HOH HOH . F 4 HOH A 110 2110 2110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 VGK . . . B 2 27.709 -10.193 24.934 1 52.98 ? C01 VGK 1280 A 1 HETATM 2 O O02 VGK . . . B 2 28.391 -10.158 23.705 1 31.78 ? O02 VGK 1280 A 1 HETATM 3 C C03 VGK . . . B 2 27.71 -10.383 22.54 1 25.57 ? C03 VGK 1280 A 1 HETATM 4 C C04 VGK . . . B 2 27.104 -9.325 21.874 1 22.07 ? C04 VGK 1280 A 1 HETATM 5 C C05 VGK . . . B 2 26.41 -9.555 20.666 1 20.47 ? C05 VGK 1280 A 1 HETATM 6 C C06 VGK . . . B 2 25.794 -8.494 20.014 1 24.26 ? C06 VGK 1280 A 1 HETATM 7 C C07 VGK . . . B 2 25.698 -7.242 20.636 1 18.85 ? C07 VGK 1280 A 1 HETATM 8 N N08 VGK . . . B 2 25.116 -6.2 19.975 1 22.78 ? N08 VGK 1280 A 1 HETATM 9 C C09 VGK . . . B 2 24.597 -6.36 18.719 1 20.92 ? C09 VGK 1280 A 1 HETATM 10 N N10 VGK . . . B 2 23.965 -5.283 18.028 1 20.37 ? N10 VGK 1280 A 1 HETATM 11 C C11 VGK . . . B 2 24.691 -7.629 18.103 1 25.83 ? C11 VGK 1280 A 1 HETATM 12 C C12 VGK . . . B 2 24.162 -7.825 16.83 1 24.62 ? C12 VGK 1280 A 1 HETATM 13 C C13 VGK . . . B 2 24.998 -8.235 15.779 1 27.49 ? C13 VGK 1280 A 1 HETATM 14 C C14 VGK . . . B 2 24.477 -8.399 14.493 1 20.07 ? C14 VGK 1280 A 1 HETATM 15 C C15 VGK . . . B 2 23.135 -8.155 14.256 1 21.63 ? C15 VGK 1280 A 1 HETATM 16 C C16 VGK . . . B 2 22.576 -8.319 12.841 1 33.86 ? C16 VGK 1280 A 1 HETATM 17 O O17 VGK . . . B 2 21.488 -7.891 12.58 1 30.67 ? O17 VGK 1280 A 1 HETATM 18 O O18 VGK . . . B 2 23.365 -8.879 11.835 1 41.15 ? O18 VGK 1280 A 1 HETATM 19 C C19 VGK . . . B 2 22.287 -7.725 15.285 1 19.93 ? C19 VGK 1280 A 1 HETATM 20 C C20 VGK . . . B 2 22.803 -7.558 16.579 1 28.56 ? C20 VGK 1280 A 1 HETATM 21 C C21 VGK . . . B 2 25.28 -8.684 18.742 1 18.25 ? C21 VGK 1280 A 1 HETATM 22 C C22 VGK . . . B 2 26.306 -10.832 20.154 1 30.66 ? C22 VGK 1280 A 1 HETATM 23 C C23 VGK . . . B 2 26.929 -11.928 20.827 1 28.35 ? C23 VGK 1280 A 1 HETATM 24 O O24 VGK . . . B 2 26.854 -13.23 20.308 1 33.3 ? O24 VGK 1280 A 1 HETATM 25 C C25 VGK . . . B 2 26.279 -13.429 19.02 1 38.28 ? C25 VGK 1280 A 1 HETATM 26 C C26 VGK . . . B 2 27.612 -11.702 22.013 1 29.21 ? C26 VGK 1280 A 1 HETATM 27 O O27 VGK . . . B 2 28.211 -12.754 22.673 1 37.01 ? O27 VGK 1280 A 1 HETATM 28 C C28 VGK . . . B 2 29.625 -12.858 22.678 1 38.65 ? C28 VGK 1280 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 529 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #