data_2WQQ # _model_server_result.job_id R2MV2Yh5we-kX3V8aO-R-w _model_server_result.datetime_utc '2024-11-17 21:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1259}' # _entry.id 2WQQ # _exptl.entry_id 2WQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 632.442 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WQQ _cell.length_a 116.634 _cell.length_b 116.634 _cell.length_c 45.385 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 F N4 O16 P' _chem_comp.formula_weight 632.442 _chem_comp.id CSF _chem_comp.mon_nstd_flag n _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms CMP-3FNEUAC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5A C4A CSF sing 70 n n C5A C6A CSF sing 71 n n C5A N5A CSF sing 72 n n C5A H5A CSF sing 73 n n C4A C3A CSF sing 74 n n C4A O4A CSF sing 75 n n C4A H4A CSF sing 76 n n C2A O6A CSF sing 77 n n C2A C3A CSF sing 78 n n C2A C1A CSF sing 79 n n C2A O1A CSF sing 80 n n O6A C6A CSF sing 81 n n C6A C7A CSF sing 82 n n C6A H6A CSF sing 83 n n C3A F3A CSF sing 84 n n C3A H3A CSF sing 85 n n O4A H4 CSF sing 86 n n N5A C10 CSF sing 87 n n N5A H3 CSF sing 88 n n C7A C8A CSF sing 89 n n C7A O7A CSF sing 90 n n C7A H7A CSF sing 91 n n C8A C9A CSF sing 92 n n C8A O8A CSF sing 93 n n C8A H8A CSF sing 94 n n C9A O9A CSF sing 95 n n C9A H9A1 CSF sing 96 n n C9A H9A2 CSF sing 97 n n O9A H9A CSF sing 98 n n O8A H2 CSF sing 99 n n O7A H1 CSF sing 100 n n C1A OBA CSF sing 101 n n C1A OAA CSF doub 102 n n OBA HBA CSF sing 103 n n O1A PA CSF sing 104 n n O2A PA CSF doub 105 n n N1 C2 CSF sing 106 n n N1 C6 CSF sing 107 n n N1 C1' CSF sing 108 n n C2 N3 CSF sing 109 n n C2 O2 CSF doub 110 n n N3 C4 CSF doub 111 n n C4 C5 CSF sing 112 n n C4 N4 CSF sing 113 n n C5 C6 CSF doub 114 n n C5 H7 CSF sing 115 n n C6 H6 CSF sing 116 n n C3' C2' CSF sing 117 n n C3' C4' CSF sing 118 n n C3' O3' CSF sing 119 n n C3' H3' CSF sing 120 n n C2' C1' CSF sing 121 n n C2' O2' CSF sing 122 n n C2' H2' CSF sing 123 n n C1' O4' CSF sing 124 n n C1' H1' CSF sing 125 n n O4' C4' CSF sing 126 n n C4' C5' CSF sing 127 n n C4' H4' CSF sing 128 n n PA O5' CSF sing 129 n n PA O3A CSF sing 130 n n O5' C5' CSF sing 131 n n C5' H5' CSF sing 132 n n C5' "H5''" CSF sing 133 n n O3' HO3' CSF sing 134 n n O2' H8 CSF sing 135 n n N4 H41 CSF sing 136 n n N4 H42 CSF sing 137 n n O3A H5 CSF sing 138 n n C10 O10 CSF doub 139 n n C10 C11 CSF sing 140 n n C11 H111 CSF sing 141 n n C11 H112 CSF sing 142 n n C11 H113 CSF sing 143 n n # _atom_sites.entry_id 2WQQ _atom_sites.fract_transf_matrix[1][1] 0.008574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CSF A 1 1259 1259 CSF CSF . C 3 PEG A 1 1260 1260 PEG PEG . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5A CSF . . . B 2 8.175 -30.632 -0.875 1 49.42 ? C5A CSF 1259 A 1 HETATM 2 C C4A CSF . . . B 2 7.362 -31.712 -1.6 1 48.29 ? C4A CSF 1259 A 1 HETATM 3 C C2A CSF . . . B 2 8.041 -30.571 -3.75 1 44.3 ? C2A CSF 1259 A 1 HETATM 4 O O6A CSF . . . B 2 8.958 -29.729 -2.992 1 45.15 ? O6A CSF 1259 A 1 HETATM 5 C C6A CSF . . . B 2 9.369 -30.202 -1.718 1 45.87 ? C6A CSF 1259 A 1 HETATM 6 C C3A CSF . . . B 2 6.899 -31.177 -2.938 1 47.3 ? C3A CSF 1259 A 1 HETATM 7 O O4A CSF . . . B 2 6.204 -32.041 -0.833 1 49.37 ? O4A CSF 1259 A 1 HETATM 8 N N5A CSF . . . B 2 8.707 -31.199 0.366 1 54.18 ? N5A CSF 1259 A 1 HETATM 9 C C7A CSF . . . B 2 10.137 -29.061 -1.064 1 43.96 ? C7A CSF 1259 A 1 HETATM 10 C C8A CSF . . . B 2 11.287 -28.613 -1.937 1 43.07 ? C8A CSF 1259 A 1 HETATM 11 C C9A CSF . . . B 2 12.123 -27.521 -1.237 1 40.91 ? C9A CSF 1259 A 1 HETATM 12 O O9A CSF . . . B 2 13.014 -26.895 -2.179 1 38.2 ? O9A CSF 1259 A 1 HETATM 13 O O8A CSF . . . B 2 12.078 -29.753 -2.285 1 41.12 ? O8A CSF 1259 A 1 HETATM 14 O O7A CSF . . . B 2 9.291 -27.935 -0.909 1 44.65 ? O7A CSF 1259 A 1 HETATM 15 C C1A CSF . . . B 2 7.411 -29.637 -4.749 1 41.56 ? C1A CSF 1259 A 1 HETATM 16 O OBA CSF . . . B 2 7.676 -28.44 -4.652 1 39.71 ? OBA CSF 1259 A 1 HETATM 17 O OAA CSF . . . B 2 6.664 -30.143 -5.586 1 44.09 ? OAA CSF 1259 A 1 HETATM 18 O O1A CSF . . . B 2 8.649 -31.624 -4.487 1 43 ? O1A CSF 1259 A 1 HETATM 19 O O2A CSF . . . B 2 10.062 -32.968 -3.048 1 44.59 ? O2A CSF 1259 A 1 HETATM 20 N N1 CSF . . . B 2 8.553 -36.211 -6.847 1 53.07 ? N1 CSF 1259 A 1 HETATM 21 C C2 CSF . . . B 2 7.592 -37.192 -6.68 1 54.59 ? C2 CSF 1259 A 1 HETATM 22 N N3 CSF . . . B 2 7.852 -38.268 -5.792 1 55.68 ? N3 CSF 1259 A 1 HETATM 23 C C4 CSF . . . B 2 9.067 -38.308 -5.09 1 54.83 ? C4 CSF 1259 A 1 HETATM 24 C C5 CSF . . . B 2 10.03 -37.311 -5.265 1 53.91 ? C5 CSF 1259 A 1 HETATM 25 C C6 CSF . . . B 2 9.777 -36.269 -6.153 1 52.74 ? C6 CSF 1259 A 1 HETATM 26 C C3' CSF . . . B 2 7.733 -33.153 -6.695 1 52.16 ? C3' CSF 1259 A 1 HETATM 27 C C2' CSF . . . B 2 6.998 -34.263 -7.446 1 51.56 ? C2' CSF 1259 A 1 HETATM 28 C C1' CSF . . . B 2 8.205 -35.148 -7.824 1 52.25 ? C1' CSF 1259 A 1 HETATM 29 O O4' CSF . . . B 2 9.363 -34.288 -7.998 1 50.48 ? O4' CSF 1259 A 1 HETATM 30 C C4' CSF . . . B 2 8.997 -32.961 -7.576 1 50.04 ? C4' CSF 1259 A 1 HETATM 31 P PA CSF . . . B 2 10.13 -32.162 -4.266 1 41.32 ? PA CSF 1259 A 1 HETATM 32 O O5' CSF . . . B 2 10.269 -33.108 -5.53 1 43.68 ? O5' CSF 1259 A 1 HETATM 33 C C5' CSF . . . B 2 10.214 -32.458 -6.785 1 47.63 ? C5' CSF 1259 A 1 HETATM 34 O O3' CSF . . . B 2 6.958 -31.933 -6.625 1 50.85 ? O3' CSF 1259 A 1 HETATM 35 O O2' CSF . . . B 2 6.342 -33.775 -8.666 1 50.85 ? O2' CSF 1259 A 1 HETATM 36 N N4 CSF . . . B 2 9.273 -39.31 -4.255 1 53.99 ? N4 CSF 1259 A 1 HETATM 37 O O2 CSF . . . B 2 6.538 -37.084 -7.32 1 52.98 ? O2 CSF 1259 A 1 HETATM 38 O O3A CSF . . . B 2 11.138 -31.113 -4.37 1 40.8 ? O3A CSF 1259 A 1 HETATM 39 C C10 CSF . . . B 2 8.886 -30.47 1.462 1 57.39 ? C10 CSF 1259 A 1 HETATM 40 O O10 CSF . . . B 2 8.609 -29.265 1.548 1 58.54 ? O10 CSF 1259 A 1 HETATM 41 C C11 CSF . . . B 2 9.463 -31.264 2.653 1 57.69 ? C11 CSF 1259 A 1 HETATM 42 F F3A CSF . . . B 2 5.901 -30.227 -2.75 1 49.02 ? F3A CSF 1259 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #