data_2WR8 # _model_server_result.job_id kUq7sD8N2GgyfZKnQjtliQ _model_server_result.datetime_utc '2025-09-01 03:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1257}' # _entry.id 2WR8 # _exptl.entry_id 2WR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WR8 _cell.length_a 65.561 _cell.length_b 65.561 _cell.length_c 142.685 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -32.7805 -56.777491 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 32.7805 -56.777491 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 264 n n N HN1 SAH sing 265 n n N HN2 SAH sing 266 n n CA CB SAH sing 267 n n CA C SAH sing 268 n n CA HA SAH sing 269 n n CB CG SAH sing 270 n n CB HB1 SAH sing 271 n n CB HB2 SAH sing 272 n n CG SD SAH sing 273 n n CG HG1 SAH sing 274 n n CG HG2 SAH sing 275 n n SD C5' SAH sing 276 n n C O SAH doub 277 n n C OXT SAH sing 278 n n OXT HXT SAH sing 279 n n C5' C4' SAH sing 280 n n C5' "H5'1" SAH sing 281 n n C5' "H5'2" SAH sing 282 n n C4' O4' SAH sing 283 n n C4' C3' SAH sing 284 n n C4' H4' SAH sing 285 n n O4' C1' SAH sing 286 n n C3' O3' SAH sing 287 n n C3' C2' SAH sing 288 n n C3' H3' SAH sing 289 n n O3' HO3' SAH sing 290 n n C2' O2' SAH sing 291 n n C2' C1' SAH sing 292 n n C2' H2' SAH sing 293 n n O2' HO2' SAH sing 294 n n C1' N9 SAH sing 295 n n C1' H1' SAH sing 296 n n N9 C8 SAH sing 297 n y N9 C4 SAH sing 298 n y C8 N7 SAH doub 299 n y C8 H8 SAH sing 300 n n N7 C5 SAH sing 301 n y C5 C6 SAH sing 302 n y C5 C4 SAH doub 303 n y C6 N6 SAH sing 304 n n C6 N1 SAH doub 305 n y N6 HN61 SAH sing 306 n n N6 HN62 SAH sing 307 n n N1 C2 SAH sing 308 n y C2 N3 SAH doub 309 n y C2 H2 SAH sing 310 n n N3 C4 SAH sing 311 n y # _atom_sites.entry_id 2WR8 _atom_sites.fract_transf_matrix[1][1] 0.015253 _atom_sites.fract_transf_matrix[1][2] 0.008806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 1257 1257 SAH SAH . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 17.503 -42.096 7.068 1 35.3 ? N SAH 1257 A 1 HETATM 2 C CA SAH . . . B 2 17.673 -43.164 6.06 1 36.64 ? CA SAH 1257 A 1 HETATM 3 C CB SAH . . . B 2 16.279 -43.64 5.535 1 35.13 ? CB SAH 1257 A 1 HETATM 4 C CG SAH . . . B 2 16.29 -45.038 4.919 1 37 ? CG SAH 1257 A 1 HETATM 5 S SD SAH . . . B 2 14.558 -45.519 4.434 1 34.5 ? SD SAH 1257 A 1 HETATM 6 C C SAH . . . B 2 18.489 -42.676 4.877 1 37.07 ? C SAH 1257 A 1 HETATM 7 O O SAH . . . B 2 18.571 -41.445 4.654 1 37.9 ? O SAH 1257 A 1 HETATM 8 O OXT SAH . . . B 2 19.041 -43.562 4.193 1 38.39 ? OXT SAH 1257 A 1 HETATM 9 C C5' SAH . . . B 2 14.766 -47.307 4.141 1 32.58 ? C5' SAH 1257 A 1 HETATM 10 C C4' SAH . . . B 2 14.419 -48.251 5.261 1 31.53 ? C4' SAH 1257 A 1 HETATM 11 O O4' SAH . . . B 2 15.173 -47.875 6.433 1 31.72 ? O4' SAH 1257 A 1 HETATM 12 C C3' SAH . . . B 2 12.95 -48.105 5.699 1 30.4 ? C3' SAH 1257 A 1 HETATM 13 O O3' SAH . . . B 2 12.132 -49.051 5.02 1 30.9 ? O3' SAH 1257 A 1 HETATM 14 C C2' SAH . . . B 2 13.022 -48.33 7.232 1 31.56 ? C2' SAH 1257 A 1 HETATM 15 O O2' SAH . . . B 2 12.276 -49.502 7.592 1 33.06 ? O2' SAH 1257 A 1 HETATM 16 C C1' SAH . . . B 2 14.537 -48.489 7.543 1 31.76 ? C1' SAH 1257 A 1 HETATM 17 N N9 SAH . . . B 2 14.858 -47.62 8.712 1 29.66 ? N9 SAH 1257 A 1 HETATM 18 C C8 SAH . . . B 2 14.821 -46.261 8.753 1 30.53 ? C8 SAH 1257 A 1 HETATM 19 N N7 SAH . . . B 2 15.172 -45.833 9.988 1 29.43 ? N7 SAH 1257 A 1 HETATM 20 C C5 SAH . . . B 2 15.45 -46.932 10.712 1 29.7 ? C5 SAH 1257 A 1 HETATM 21 C C6 SAH . . . B 2 15.861 -47.098 12.041 1 32.19 ? C6 SAH 1257 A 1 HETATM 22 N N6 SAH . . . B 2 16.019 -46.027 12.876 1 31.51 ? N6 SAH 1257 A 1 HETATM 23 N N1 SAH . . . B 2 16.082 -48.35 12.482 1 31.86 ? N1 SAH 1257 A 1 HETATM 24 C C2 SAH . . . B 2 15.906 -49.419 11.679 1 30.18 ? C2 SAH 1257 A 1 HETATM 25 N N3 SAH . . . B 2 15.538 -49.308 10.386 1 29.96 ? N3 SAH 1257 A 1 HETATM 26 C C4 SAH . . . B 2 15.281 -48.054 9.894 1 28.62 ? C4 SAH 1257 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #