data_2WRF # _model_server_result.job_id hSHCEuY2X6psoBIx6k6yFw _model_server_result.datetime_utc '2024-10-17 11:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1497}' # _entry.id 2WRF # _exptl.entry_id 2WRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.2 _cell.angle_gamma 90 _cell.entry_id 2WRF _cell.length_a 134.173 _cell.length_b 113.278 _cell.length_c 184.668 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,J,K 1 1 A,B,C 2 1 G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 SIA _pdbx_entity_branch_link.comp_id_2 GAL _pdbx_entity_branch_link.atom_id_1 C2 _pdbx_entity_branch_link.leaving_atom_id_1 O2 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n J GAL 1 J 1 GAL F 1498 GAL 2 n J SIA 2 J 2 SIA F 1497 SIA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 8 1_555 A SG CYS 477 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 57 A CYS 46 1_555 A SG CYS 288 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 70 A CYS 59 1_555 A SG CYS 82 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 292 A CYS 281 1_555 A SG CYS 316 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 A SG CYS 484 A CYS 473 1_555 A SG CYS 488 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 19 B CYS 8 1_555 B SG CYS 477 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 B SG CYS 57 B CYS 46 1_555 B SG CYS 288 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 B SG CYS 70 B CYS 59 1_555 B SG CYS 82 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 B SG CYS 105 B CYS 94 1_555 B SG CYS 149 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf10 B SG CYS 292 B CYS 281 1_555 B SG CYS 316 B CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf11 B SG CYS 484 B CYS 473 1_555 B SG CYS 488 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 19 C CYS 8 1_555 C SG CYS 477 C CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf13 C SG CYS 57 C CYS 46 1_555 C SG CYS 288 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 C SG CYS 70 C CYS 59 1_555 C SG CYS 82 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 C SG CYS 105 C CYS 94 1_555 C SG CYS 149 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf16 C SG CYS 292 C CYS 281 1_555 C SG CYS 316 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 C SG CYS 484 C CYS 473 1_555 C SG CYS 488 C CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 D SG CYS 19 D CYS 8 1_555 D SG CYS 477 D CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 D SG CYS 57 D CYS 46 1_555 D SG CYS 288 D CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf20 D SG CYS 70 D CYS 59 1_555 D SG CYS 82 D CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf21 D SG CYS 105 D CYS 94 1_555 D SG CYS 149 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf22 D SG CYS 292 D CYS 281 1_555 D SG CYS 316 D CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf23 D SG CYS 484 D CYS 473 1_555 D SG CYS 488 D CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 E SG CYS 19 E CYS 8 1_555 E SG CYS 477 E CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? disulf ? disulf25 E SG CYS 57 E CYS 46 1_555 E SG CYS 288 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 E SG CYS 70 E CYS 59 1_555 E SG CYS 82 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf27 E SG CYS 105 E CYS 94 1_555 E SG CYS 149 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf28 E SG CYS 292 E CYS 281 1_555 E SG CYS 316 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf29 E SG CYS 484 E CYS 473 1_555 E SG CYS 488 E CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 F SG CYS 19 F CYS 8 1_555 F SG CYS 477 F CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf31 F SG CYS 57 F CYS 46 1_555 F SG CYS 288 F CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf32 F SG CYS 70 F CYS 59 1_555 F SG CYS 82 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf33 F SG CYS 105 F CYS 94 1_555 F SG CYS 149 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf34 F SG CYS 292 F CYS 281 1_555 F SG CYS 316 F CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf35 F SG CYS 484 F CYS 473 1_555 F SG CYS 488 F CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf36 G SG CYS 19 G CYS 8 1_555 G SG CYS 477 G CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf37 G SG CYS 57 G CYS 46 1_555 G SG CYS 288 G CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf38 G SG CYS 70 G CYS 59 1_555 G SG CYS 82 G CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf39 G SG CYS 105 G CYS 94 1_555 G SG CYS 149 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf40 G SG CYS 292 G CYS 281 1_555 G SG CYS 316 G CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf41 G SG CYS 484 G CYS 473 1_555 G SG CYS 488 G CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf42 H SG CYS 19 H CYS 8 1_555 H SG CYS 477 H CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf43 H SG CYS 57 H CYS 46 1_555 H SG CYS 288 H CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf44 H SG CYS 70 H CYS 59 1_555 H SG CYS 82 H CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf45 H SG CYS 105 H CYS 94 1_555 H SG CYS 149 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf46 H SG CYS 292 H CYS 281 1_555 H SG CYS 316 H CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf47 H SG CYS 484 H CYS 473 1_555 H SG CYS 488 H CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf48 I SG CYS 19 I CYS 8 1_555 I SG CYS 477 I CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf49 I SG CYS 57 I CYS 46 1_555 I SG CYS 288 I CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf50 I SG CYS 70 I CYS 59 1_555 I SG CYS 82 I CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf51 I SG CYS 105 I CYS 94 1_555 I SG CYS 149 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf52 I SG CYS 292 I CYS 281 1_555 I SG CYS 316 I CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf53 I SG CYS 484 I CYS 473 1_555 I SG CYS 488 I CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 J O6 GAL . J GAL 1 1_555 J C2 SIA . J SIA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2WRF _atom_sites.fract_transf_matrix[1][1] 0.007453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000286 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id K _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id SIA _pdbx_nonpoly_scheme.pdb_strand_id D _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1497 _pdbx_nonpoly_scheme.auth_seq_num 1497 _pdbx_nonpoly_scheme.pdb_mon_id SIA _pdbx_nonpoly_scheme.auth_mon_id SIA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . K 3 24.478 -6.118 -20.678 1 52.27 ? C1 SIA 1497 D 1 HETATM 2 C C2 SIA . . . K 3 25.961 -6.324 -20.321 1 52.27 ? C2 SIA 1497 D 1 HETATM 3 C C3 SIA . . . K 3 26.78 -5.56 -21.363 1 52.27 ? C3 SIA 1497 D 1 HETATM 4 C C4 SIA . . . K 3 26.531 -4.058 -21.221 1 52.27 ? C4 SIA 1497 D 1 HETATM 5 C C5 SIA . . . K 3 26.986 -3.631 -19.834 1 52.27 ? C5 SIA 1497 D 1 HETATM 6 C C6 SIA . . . K 3 26.185 -4.41 -18.831 1 52.27 ? C6 SIA 1497 D 1 HETATM 7 C C7 SIA . . . K 3 26.661 -4.082 -17.438 1 52.27 ? C7 SIA 1497 D 1 HETATM 8 C C8 SIA . . . K 3 26.054 -5 -16.371 1 52.27 ? C8 SIA 1497 D 1 HETATM 9 C C9 SIA . . . K 3 26.265 -4.392 -14.996 1 52.27 ? C9 SIA 1497 D 1 HETATM 10 C C10 SIA . . . K 3 27.767 -1.347 -19.326 1 52.27 ? C10 SIA 1497 D 1 HETATM 11 C C11 SIA . . . K 3 27.339 0.096 -19.168 1 52.27 ? C11 SIA 1497 D 1 HETATM 12 N N5 SIA . . . K 3 26.788 -2.205 -19.634 1 52.27 ? N5 SIA 1497 D 1 HETATM 13 O O1A SIA . . . K 3 23.735 -5.343 -20.031 1 52.27 ? O1A SIA 1497 D 1 HETATM 14 O O1B SIA . . . K 3 24.051 -6.74 -21.668 1 52.27 ? O1B SIA 1497 D 1 HETATM 15 O O2 SIA . . . K 3 26.213 -7.705 -20.366 1 52.27 ? O2 SIA 1497 D 1 HETATM 16 O O4 SIA . . . K 3 27.195 -3.312 -22.246 1 52.27 ? O4 SIA 1497 D 1 HETATM 17 O O6 SIA . . . K 3 26.298 -5.824 -19.024 1 52.27 ? O6 SIA 1497 D 1 HETATM 18 O O7 SIA . . . K 3 28.07 -4.24 -17.407 1 52.27 ? O7 SIA 1497 D 1 HETATM 19 O O8 SIA . . . K 3 24.663 -5.193 -16.56 1 52.27 ? O8 SIA 1497 D 1 HETATM 20 O O9 SIA . . . K 3 25.337 -4.982 -14.115 1 52.27 ? O9 SIA 1497 D 1 HETATM 21 O O10 SIA . . . K 3 28.961 -1.649 -19.173 1 52.27 ? O10 SIA 1497 D 1 # _model_server_stats.io_time_ms 189 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 526 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #