data_2WRG # _model_server_result.job_id jAbs9lH5XYixGQLBYkqiWw _model_server_result.datetime_utc '2024-11-24 22:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1329}' # _entry.id 2WRG # _exptl.entry_id 2WRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WRG _cell.length_a 104.758 _cell.length_b 156.843 _cell.length_c 157.842 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG GAL C1 O1 . O3 HO3 . sing 2 ? 3 3 2 GAL NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 SIA GAL C2 O2 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G GAL 1 A 1 GAL J 1333 GAL 3 n G NAG 2 A 2 NAG J 1332 NAG 3 n G GAL 3 A 3 GAL J 1331 GAL 3 n G SIA 4 A 4 SIA J 1330 SIA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 H CYS 8 1_555 B SG CYS 137 I CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf2 A SG CYS 42 H CYS 47 1_555 A SG CYS 275 H CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 55 H CYS 59 1_555 A SG CYS 67 H CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 90 H CYS 94 1_555 A SG CYS 136 H CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 279 H CYS 282 1_555 A SG CYS 303 H CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 B SG CYS 144 I CYS 644 1_555 B SG CYS 148 I CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? disulf ? disulf7 C SG CYS 4 J CYS 8 1_555 D SG CYS 137 K CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 42 J CYS 47 1_555 C SG CYS 275 J CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf9 C SG CYS 55 J CYS 59 1_555 C SG CYS 67 J CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 C SG CYS 90 J CYS 94 1_555 C SG CYS 136 J CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf11 C SG CYS 279 J CYS 282 1_555 C SG CYS 303 J CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf12 D SG CYS 144 K CYS 644 1_555 D SG CYS 148 K CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf13 E SG CYS 4 L CYS 8 1_555 F SG CYS 137 M CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 E SG CYS 42 L CYS 47 1_555 E SG CYS 275 L CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf15 E SG CYS 55 L CYS 59 1_555 E SG CYS 67 L CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf16 E SG CYS 90 L CYS 94 1_555 E SG CYS 136 L CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf17 E SG CYS 279 L CYS 282 1_555 E SG CYS 303 L CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf18 F SG CYS 144 M CYS 644 1_555 F SG CYS 148 M CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? covale ? covale1 G O3 GAL . A GAL 1 1_555 G C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.515 ? covale ? covale2 G O4 NAG . A NAG 2 1_555 G C1 GAL . A GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.214 ? covale ? covale3 G O6 GAL . A GAL 3 1_555 G C2 SIA . A SIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2WRG _atom_sites.fract_transf_matrix[1][1] 0.009546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 NAG H 1 1328 1328 NAG NAG . I 4 NAG H 1 1329 1329 NAG NAG . J 4 NAG H 1 1330 1330 NAG NAG . K 4 NAG H 1 1331 1331 NAG NAG . L 4 NAG H 1 1332 1332 NAG NAG . M 4 NAG J 1 1328 1328 NAG NAG . N 4 NAG J 1 1329 1329 NAG NAG . O 4 NAG K 1 1661 1661 NAG NAG . P 4 NAG L 1 1328 1328 NAG NAG . Q 4 NAG L 1 1329 1329 NAG NAG . R 4 NAG M 1 1661 1661 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 4 5.125 42.088 10.381 1 128.63 ? C1 NAG 1329 J 1 HETATM 2 C C2 NAG . . . N 4 5.998 42.795 9.366 1 128.92 ? C2 NAG 1329 J 1 HETATM 3 C C3 NAG . . . N 4 5.009 43.56 8.504 1 129.5 ? C3 NAG 1329 J 1 HETATM 4 C C4 NAG . . . N 4 3.854 42.663 8.022 1 129.24 ? C4 NAG 1329 J 1 HETATM 5 C C5 NAG . . . N 4 3.603 41.356 8.81 1 129.13 ? C5 NAG 1329 J 1 HETATM 6 C C6 NAG . . . N 4 3.326 40.22 7.822 1 129.57 ? C6 NAG 1329 J 1 HETATM 7 C C7 NAG . . . N 4 8.249 43.637 9.759 1 128.6 ? C7 NAG 1329 J 1 HETATM 8 C C8 NAG . . . N 4 9.142 44.27 10.788 1 128.26 ? C8 NAG 1329 J 1 HETATM 9 N N2 NAG . . . N 4 6.942 43.693 9.998 1 128.89 ? N2 NAG 1329 J 1 HETATM 10 O O1 NAG . . . N 4 5.822 41.697 11.541 1 128.14 ? O1 NAG 1329 J 1 HETATM 11 O O3 NAG . . . N 4 5.673 44.142 7.4 1 129.78 ? O3 NAG 1329 J 1 HETATM 12 O O4 NAG . . . N 4 2.661 43.431 8.013 1 128.28 ? O4 NAG 1329 J 1 HETATM 13 O O5 NAG . . . N 4 4.655 40.973 9.68 1 129.16 ? O5 NAG 1329 J 1 HETATM 14 O O6 NAG . . . N 4 3.824 38.994 8.311 1 129.55 ? O6 NAG 1329 J 1 HETATM 15 O O7 NAG . . . N 4 8.713 43.101 8.753 1 128.8 ? O7 NAG 1329 J 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #