data_2WRH
#
_model_server_result.job_id            T0vL-UkB2bbekSOgBQzsAQ 
_model_server_result.datetime_utc      '2024-10-17 11:25:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wrh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1328}' 
#
_entry.id    2WRH 
#
_exptl.entry_id    2WRH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.27 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-acetyl-alpha-neuraminic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WRH 
_cell.length_a            103.416 
_cell.length_b            155.538 
_cell.length_c            157.876 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WRH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 H CYS 8 1_555 B SG CYS 137 I CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf2 A SG CYS 42 H CYS 47 1_555 A SG CYS 273 H CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 54 H CYS 59 1_555 A SG CYS 66 H CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 89 H CYS 94 1_555 A SG CYS 134 H CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf5 A SG CYS 277 H CYS 282 1_555 A SG CYS 301 H CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf6 B SG CYS 144 I CYS 644 1_555 B SG CYS 148 I CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? 
disulf ? disulf7 C SG CYS 4 J CYS 8 1_555 D SG CYS 137 K CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 C SG CYS 42 J CYS 47 1_555 C SG CYS 273 J CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf9 C SG CYS 54 J CYS 59 1_555 C SG CYS 66 J CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 C SG CYS 89 J CYS 94 1_555 C SG CYS 134 J CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf11 C SG CYS 277 J CYS 282 1_555 C SG CYS 301 J CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf12 D SG CYS 144 K CYS 644 1_555 D SG CYS 148 K CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
disulf ? disulf13 E SG CYS 4 L CYS 8 1_555 F SG CYS 137 M CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 E SG CYS 42 L CYS 47 1_555 E SG CYS 273 L CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf15 E SG CYS 54 L CYS 59 1_555 E SG CYS 66 L CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf16 E SG CYS 89 L CYS 94 1_555 E SG CYS 134 L CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf17 E SG CYS 277 L CYS 282 1_555 E SG CYS 301 L CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf18 F SG CYS 144 M CYS 644 1_555 F SG CYS 148 M CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
#
_chem_comp.formula           'C11 H19 N O9' 
_chem_comp.formula_weight    309.27 
_chem_comp.id                SIA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-acetyl-alpha-neuraminic acid' 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SIA sing 288 n n 
C1 O1A SIA doub 289 n n 
C1 O1B SIA sing 290 n n 
C2 C3 SIA sing 291 n n 
C2 O2 SIA sing 292 n n 
C2 O6 SIA sing 293 n n 
C3 C4 SIA sing 294 n n 
C3 H32 SIA sing 295 n n 
C3 H31 SIA sing 296 n n 
C4 C5 SIA sing 297 n n 
C4 O4 SIA sing 298 n n 
C4 H4 SIA sing 299 n n 
C5 C6 SIA sing 300 n n 
C5 N5 SIA sing 301 n n 
C5 H5 SIA sing 302 n n 
C6 C7 SIA sing 303 n n 
C6 O6 SIA sing 304 n n 
C6 H6 SIA sing 305 n n 
C7 C8 SIA sing 306 n n 
C7 O7 SIA sing 307 n n 
C7 H7 SIA sing 308 n n 
C8 C9 SIA sing 309 n n 
C8 O8 SIA sing 310 n n 
C8 H8 SIA sing 311 n n 
C9 O9 SIA sing 312 n n 
C9 H92 SIA sing 313 n n 
C9 H91 SIA sing 314 n n 
C10 C11 SIA sing 315 n n 
C10 N5 SIA sing 316 n n 
C10 O10 SIA doub 317 n n 
C11 H111 SIA sing 318 n n 
C11 H113 SIA sing 319 n n 
C11 H112 SIA sing 320 n n 
N5 HN5 SIA sing 321 n n 
O1B HO1B SIA sing 322 n n 
O2 HO2 SIA sing 323 n n 
O4 HO4 SIA sing 324 n n 
O7 HO7 SIA sing 325 n n 
O8 HO8 SIA sing 326 n n 
O9 HO9 SIA sing 327 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 
SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2WRH 
_atom_sites.fract_transf_matrix[1][1]    0.00967 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 SIA H 1 1328 1328 SIA SIA . 
H 3 SIA J 1 1328 1328 SIA SIA . 
I 3 SIA L 1 1328 1328 SIA SIA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIA . . . H 3 20.146 46.222 2.148 1 129.58 ? C1 SIA 1328 J 1 
HETATM 2 C C2 SIA . . . H 3 21.091 46.781 0.931 1 127.72 ? C2 SIA 1328 J 1 
HETATM 3 C C3 SIA . . . H 3 22.253 47.586 1.395 1 125.91 ? C3 SIA 1328 J 1 
HETATM 4 C C4 SIA . . . H 3 23.306 46.576 2.101 1 125.09 ? C4 SIA 1328 J 1 
HETATM 5 C C5 SIA . . . H 3 23.806 45.535 1.025 1 124.01 ? C5 SIA 1328 J 1 
HETATM 6 C C6 SIA . . . H 3 22.559 44.612 0.515 1 123.09 ? C6 SIA 1328 J 1 
HETATM 7 C C7 SIA . . . H 3 22.946 43.63 -0.563 1 121.01 ? C7 SIA 1328 J 1 
HETATM 8 C C8 SIA . . . H 3 21.764 42.9 -1.202 1 119.97 ? C8 SIA 1328 J 1 
HETATM 9 C C9 SIA . . . H 3 22.285 41.928 -2.273 1 117.7 ? C9 SIA 1328 J 1 
HETATM 10 C C10 SIA . . . H 3 26.071 44.426 1.496 1 122.65 ? C10 SIA 1328 J 1 
HETATM 11 C C11 SIA . . . H 3 26.916 45.148 0.45 1 120.99 ? C11 SIA 1328 J 1 
HETATM 12 N N5 SIA . . . H 3 24.749 44.649 1.682 1 122.09 ? N5 SIA 1328 J 1 
HETATM 13 O O1A SIA . . . H 3 19.585 47.118 2.835 1 131.37 ? O1A SIA 1328 J 1 
HETATM 14 O O1B SIA . . . H 3 19.981 45.018 2.412 1 129.49 ? O1B SIA 1328 J 1 
HETATM 15 O O4 SIA . . . H 3 24.267 47.317 2.484 1 125.11 ? O4 SIA 1328 J 1 
HETATM 16 O O6 SIA . . . H 3 21.699 45.662 0.225 1 126.72 ? O6 SIA 1328 J 1 
HETATM 17 O O7 SIA . . . H 3 23.643 44.37 -1.584 1 120.64 ? O7 SIA 1328 J 1 
HETATM 18 O O8 SIA . . . H 3 21.049 42.164 -0.209 1 120.12 ? O8 SIA 1328 J 1 
HETATM 19 O O9 SIA . . . H 3 21.237 41.224 -2.893 1 121.17 ? O9 SIA 1328 J 1 
HETATM 20 O O10 SIA . . . H 3 26.617 43.59 2.214 1 125.25 ? O10 SIA 1328 J 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#