data_2WS3
#
_model_server_result.job_id            -3dIBWktHPTV9P638-E2jw 
_model_server_result.datetime_utc      '2024-11-06 01:35:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ws3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":1129}' 
#
_entry.id    2WS3 
#
_exptl.entry_id    2WS3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              235.302 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-OXATHIINE-3-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WS3 
_cell.length_a            119.85 
_cell.length_b            184.71 
_cell.length_c            203.31 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WS3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
I,J,K,L,CA,DA,EA,FA,GA,HA,IA,JA 1 1 
E,F,G,H,U,V,W,X,Y,Z,AA,BA 2 1 
A,B,C,D,M,N,O,P,Q,R,S,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 S N N 
? 11 AA N N 
? 11 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 356 A MET 356 1_555 N NA NA . A NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc2 A O MET 357 A MET 357 1_555 N NA NA . A NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc3 A O GLY 358 A GLY 358 1_555 N NA NA . A NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc4 A O GLU 388 A GLU 388 1_555 N NA NA . A NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc5 A O ALA 390 A ALA 390 1_555 N NA NA . A NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc6 B SG CYS 55 B CYS 55 1_555 P FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 B SG CYS 60 B CYS 60 1_555 P FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc8 B OD1 ASP 63 B ASP 63 1_555 P FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
metalc ? metalc9 B SG CYS 75 B CYS 75 1_555 P FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc10 B SG CYS 149 B CYS 149 1_555 Q FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc11 B SG CYS 152 B CYS 152 1_555 Q FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc12 B SG CYS 155 B CYS 155 1_555 Q FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 B SG CYS 159 B CYS 159 1_555 R FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc14 B SG CYS 206 B CYS 206 1_555 R FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc15 B SG CYS 212 B CYS 212 1_555 R FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc16 B SG CYS 216 B CYS 216 1_555 Q FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc17 C NE2 HIS 84 C HIS 84 1_555 T FE HEM . C HEM 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc18 T FE HEM . C HEM 1130 1_555 D NE2 HIS 71 D HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc19 E O MET 356 E MET 356 1_555 V NA NA . E NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc20 E O MET 357 E MET 357 1_555 V NA NA . E NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc21 E O GLY 358 E GLY 358 1_555 V NA NA . E NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc22 E O GLU 388 E GLU 388 1_555 V NA NA . E NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc23 E O ALA 390 E ALA 390 1_555 V NA NA . E NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc24 F SG CYS 55 F CYS 55 1_555 X FE1 FES . F FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc25 F SG CYS 60 F CYS 60 1_555 X FE1 FES . F FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc26 F OD1 ASP 63 F ASP 63 1_555 X FE2 FES . F FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
metalc ? metalc27 F SG CYS 75 F CYS 75 1_555 X FE2 FES . F FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc28 F SG CYS 149 F CYS 149 1_555 Y FE3 SF4 . F SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc29 F SG CYS 152 F CYS 152 1_555 Y FE4 SF4 . F SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc30 F SG CYS 155 F CYS 155 1_555 Y FE1 SF4 . F SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc31 F SG CYS 159 F CYS 159 1_555 Z FE1 F3S . F F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc32 F SG CYS 206 F CYS 206 1_555 Z FE3 F3S . F F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc33 F SG CYS 212 F CYS 212 1_555 Z FE4 F3S . F F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc34 F SG CYS 216 F CYS 216 1_555 Y FE2 SF4 . F SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc35 G NE2 HIS 84 G HIS 84 1_555 BA FE HEM . G HEM 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc36 BA FE HEM . G HEM 1130 1_555 H NE2 HIS 71 H HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc37 I O MET 356 I MET 356 1_555 DA NA NA . I NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc38 I O MET 357 I MET 357 1_555 DA NA NA . I NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.172 ? 
metalc ? metalc39 I O GLY 358 I GLY 358 1_555 DA NA NA . I NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc40 I O GLU 388 I GLU 388 1_555 DA NA NA . I NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc41 I O ALA 390 I ALA 390 1_555 DA NA NA . I NA 1589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc42 J SG CYS 55 J CYS 55 1_555 FA FE1 FES . J FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc43 J SG CYS 60 J CYS 60 1_555 FA FE1 FES . J FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc44 J OD1 ASP 63 J ASP 63 1_555 FA FE2 FES . J FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
metalc ? metalc45 J SG CYS 75 J CYS 75 1_555 FA FE2 FES . J FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc46 J SG CYS 149 J CYS 149 1_555 GA FE3 SF4 . J SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc47 J SG CYS 152 J CYS 152 1_555 GA FE4 SF4 . J SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc48 J SG CYS 155 J CYS 155 1_555 GA FE1 SF4 . J SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc49 J SG CYS 159 J CYS 159 1_555 HA FE1 F3S . J F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc50 J SG CYS 206 J CYS 206 1_555 HA FE3 F3S . J F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc51 J SG CYS 212 J CYS 212 1_555 HA FE4 F3S . J F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc52 J SG CYS 216 J CYS 216 1_555 GA FE2 SF4 . J SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc53 K NE2 HIS 84 K HIS 84 1_555 JA FE HEM . K HEM 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc54 JA FE HEM . K HEM 1130 1_555 L NE2 HIS 71 L HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
#
_chem_comp.formula           'C12 H13 N O2 S' 
_chem_comp.formula_weight    235.302 
_chem_comp.id                CBE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-METHYL-N-PHENYL-5,6-DIHYDRO-1,4-OXATHIINE-3-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5,6-DIHYDRO-2-METHYL-1,4-OXATHIIN-3-CARBOXANILID;CARBOXIN;CBX 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CBE sing 70 n n 
C1 H11 CBE sing 71 n n 
C1 H12A CBE sing 72 n n 
C1 H13A CBE sing 73 n n 
C2 C3 CBE doub 74 n n 
C2 O7 CBE sing 75 n n 
C3 S4 CBE sing 76 n n 
C3 C8 CBE sing 77 n n 
S4 C5 CBE sing 78 n n 
C5 C6 CBE sing 79 n n 
C5 H51 CBE sing 80 n n 
C5 H52 CBE sing 81 n n 
C6 O7 CBE sing 82 n n 
C6 H61 CBE sing 83 n n 
C6 H62 CBE sing 84 n n 
C8 O9 CBE doub 85 n n 
C8 N10 CBE sing 86 n n 
N10 C11 CBE sing 87 n n 
N10 H10 CBE sing 88 n n 
C11 C12 CBE sing 89 n y 
C11 C16 CBE doub 90 n y 
C12 C13 CBE doub 91 n y 
C12 H12 CBE sing 92 n n 
C13 C14 CBE sing 93 n y 
C13 H13 CBE sing 94 n n 
C14 C15 CBE doub 95 n y 
C14 H14 CBE sing 96 n n 
C15 C16 CBE sing 97 n y 
C15 H15 CBE sing 98 n n 
C16 H16 CBE sing 99 n n 
#
_atom_sites.entry_id                     2WS3 
_atom_sites.fract_transf_matrix[1][1]    0.008344 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 FAD A 1 601 601 FAD FAD . 
N 6 NA A 1 1589 1589 NA NA . 
O 7 TEO A 1 1590 1590 TEO TEO . 
P 8 FES B 1 302 302 FES FES . 
Q 9 SF4 B 1 303 303 SF4 SF4 . 
R 10 F3S B 1 304 304 F3S F3S . 
S 11 CBE C 1 1129 1129 CBE CBE . 
T 12 HEM C 1 1130 1130 HEM HEM . 
U 5 FAD E 1 601 601 FAD FAD . 
V 6 NA E 1 1589 1589 NA NA . 
W 7 TEO E 1 1590 1590 TEO TEO . 
X 8 FES F 1 302 302 FES FES . 
Y 9 SF4 F 1 303 303 SF4 SF4 . 
Z 10 F3S F 1 304 304 F3S F3S . 
AA 11 CBE G 1 1129 1129 CBE CBE . 
BA 12 HEM G 1 1130 1130 HEM HEM . 
CA 5 FAD I 1 601 601 FAD FAD . 
DA 6 NA I 1 1589 1589 NA NA . 
EA 7 TEO I 1 1590 1590 TEO TEO . 
FA 8 FES J 1 302 302 FES FES . 
GA 9 SF4 J 1 303 303 SF4 SF4 . 
HA 10 F3S J 1 304 304 F3S F3S . 
IA 11 CBE K 1 1129 1129 CBE CBE . 
JA 12 HEM K 1 1130 1130 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CBE . . . AA 11 53.703 -50.091 -27.926 1 57.99 ? C1 CBE 1129 G 1 
HETATM 2 C C2 CBE . . . AA 11 55.003 -50.847 -28.304 1 58.79 ? C2 CBE 1129 G 1 
HETATM 3 C C3 CBE . . . AA 11 55.834 -51.36 -27.309 1 58.13 ? C3 CBE 1129 G 1 
HETATM 4 S S4 CBE . . . AA 11 57.229 -52.268 -27.787 1 57.58 ? S4 CBE 1129 G 1 
HETATM 5 C C5 CBE . . . AA 11 57.69 -51.739 -29.503 1 56.55 ? C5 CBE 1129 G 1 
HETATM 6 C C6 CBE . . . AA 11 56.696 -50.773 -30.138 1 57.3 ? C6 CBE 1129 G 1 
HETATM 7 O O7 CBE . . . AA 11 55.324 -51.049 -29.65 1 59.13 ? O7 CBE 1129 G 1 
HETATM 8 C C8 CBE . . . AA 11 55.302 -51.749 -25.939 1 60 ? C8 CBE 1129 G 1 
HETATM 9 O O9 CBE . . . AA 11 54.79 -50.879 -25.231 1 61.17 ? O9 CBE 1129 G 1 
HETATM 10 N N10 CBE . . . AA 11 55.926 -52.842 -25.452 1 61.59 ? N10 CBE 1129 G 1 
HETATM 11 C C11 CBE . . . AA 11 55.644 -53.407 -24.26 1 62.94 ? C11 CBE 1129 G 1 
HETATM 12 C C12 CBE . . . AA 11 55.481 -54.801 -24.203 1 62.24 ? C12 CBE 1129 G 1 
HETATM 13 C C13 CBE . . . AA 11 55.185 -55.38 -22.959 1 62.84 ? C13 CBE 1129 G 1 
HETATM 14 C C14 CBE . . . AA 11 55.05 -54.601 -21.79 1 61.81 ? C14 CBE 1129 G 1 
HETATM 15 C C15 CBE . . . AA 11 55.214 -53.222 -21.844 1 61.48 ? C15 CBE 1129 G 1 
HETATM 16 C C16 CBE . . . AA 11 55.516 -52.629 -23.077 1 62.25 ? C16 CBE 1129 G 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           396 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#