data_2WTD # _model_server_result.job_id ZTavwzZ47ZOggQRXvBeCmQ _model_server_result.datetime_utc '2025-02-18 04:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1513}' # _entry.id 2WTD # _exptl.entry_id 2WTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.341 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-AMINO-5-(1,3-BENZODIOXOL-4-YL)PYRIDIN-3-YL]BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WTD _cell.length_a 90.89 _cell.length_b 90.89 _cell.length_c 92.83 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H15 N3 O3' _chem_comp.formula_weight 333.341 _chem_comp.id ZZK _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-AMINO-5-(1,3-BENZODIOXOL-4-YL)PYRIDIN-3-YL]BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 ZZK sing 388 n n C02 O03 ZZK doub 389 n n C02 C04 ZZK sing 390 n n C04 C05 ZZK sing 391 n y C04 C25 ZZK doub 392 n y C05 C06 ZZK doub 393 n y C06 C07 ZZK sing 394 n y C07 C08 ZZK sing 395 n y C07 C24 ZZK doub 396 n y C08 C09 ZZK doub 397 n y C08 C22 ZZK sing 398 n y C09 C10 ZZK sing 399 n y C10 C11 ZZK sing 400 n y C10 C20 ZZK doub 401 n y C11 C12 ZZK sing 402 n y C11 C19 ZZK doub 403 n y C12 C13 ZZK doub 404 n y C13 C14 ZZK sing 405 n y C14 C15 ZZK doub 406 n y C15 O16 ZZK sing 407 n n C15 C19 ZZK sing 408 n y O16 C17 ZZK sing 409 n n C17 O18 ZZK sing 410 n n O18 C19 ZZK sing 411 n n C20 N21 ZZK sing 412 n y N21 C22 ZZK doub 413 n y C22 N23 ZZK sing 414 n n C24 C25 ZZK sing 415 n y N01 H011 ZZK sing 416 n n N01 H012 ZZK sing 417 n n C05 H05 ZZK sing 418 n n C25 H25 ZZK sing 419 n n C06 H06 ZZK sing 420 n n C24 H24 ZZK sing 421 n n C09 H09 ZZK sing 422 n n C20 H20 ZZK sing 423 n n C12 H12 ZZK sing 424 n n C13 H13 ZZK sing 425 n n C14 H14 ZZK sing 426 n n C17 H171 ZZK sing 427 n n C17 H172 ZZK sing 428 n n N23 H231 ZZK sing 429 n n N23 H232 ZZK sing 430 n n # _atom_sites.entry_id 2WTD _atom_sites.fract_transf_matrix[1][1] 0.011002 _atom_sites.fract_transf_matrix[1][2] 0.006352 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZZK A 1 1513 1513 ZZK ZZK . C 3 NO3 A 1 1514 1514 NO3 NO3 . D 4 EDO A 1 1515 1515 EDO EDO . E 4 EDO A 1 1516 1516 EDO EDO . F 4 EDO A 1 1517 1517 EDO EDO . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . G 5 HOH A 57 2057 2057 HOH HOH . G 5 HOH A 58 2058 2058 HOH HOH . G 5 HOH A 59 2059 2059 HOH HOH . G 5 HOH A 60 2060 2060 HOH HOH . G 5 HOH A 61 2061 2061 HOH HOH . G 5 HOH A 62 2062 2062 HOH HOH . G 5 HOH A 63 2063 2063 HOH HOH . G 5 HOH A 64 2064 2064 HOH HOH . G 5 HOH A 65 2065 2065 HOH HOH . G 5 HOH A 66 2066 2066 HOH HOH . G 5 HOH A 67 2067 2067 HOH HOH . G 5 HOH A 68 2068 2068 HOH HOH . G 5 HOH A 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 ZZK . . . B 2 35.078 -32.201 13.716 1 62.37 ? N01 ZZK 1513 A 1 HETATM 2 C C02 ZZK . . . B 2 34.761 -33.372 12.921 1 62.41 ? C02 ZZK 1513 A 1 HETATM 3 O O03 ZZK . . . B 2 34.159 -34.268 13.426 1 62.78 ? O03 ZZK 1513 A 1 HETATM 4 C C04 ZZK . . . B 2 35.342 -33.465 11.503 1 59.89 ? C04 ZZK 1513 A 1 HETATM 5 C C05 ZZK . . . B 2 35.48 -32.295 10.735 1 58.53 ? C05 ZZK 1513 A 1 HETATM 6 C C06 ZZK . . . B 2 36.068 -32.352 9.462 1 59.5 ? C06 ZZK 1513 A 1 HETATM 7 C C07 ZZK . . . B 2 36.526 -33.575 8.942 1 62.11 ? C07 ZZK 1513 A 1 HETATM 8 C C08 ZZK . . . B 2 37.116 -33.611 7.677 1 61.8 ? C08 ZZK 1513 A 1 HETATM 9 C C09 ZZK . . . B 2 37.99 -32.618 7.297 1 64.15 ? C09 ZZK 1513 A 1 HETATM 10 C C10 ZZK . . . B 2 38.57 -32.618 6.046 1 65.63 ? C10 ZZK 1513 A 1 HETATM 11 C C11 ZZK . . . B 2 39.401 -31.568 5.653 1 70.41 ? C11 ZZK 1513 A 1 HETATM 12 C C12 ZZK . . . B 2 39.419 -30.395 6.427 1 73.42 ? C12 ZZK 1513 A 1 HETATM 13 C C13 ZZK . . . B 2 40.207 -29.297 6.052 1 73.37 ? C13 ZZK 1513 A 1 HETATM 14 C C14 ZZK . . . B 2 40.947 -29.352 4.865 1 75.67 ? C14 ZZK 1513 A 1 HETATM 15 C C15 ZZK . . . B 2 40.903 -30.498 4.058 1 75.89 ? C15 ZZK 1513 A 1 HETATM 16 O O16 ZZK . . . B 2 41.54 -30.81 2.809 1 75.07 ? O16 ZZK 1513 A 1 HETATM 17 C C17 ZZK . . . B 2 40.979 -32.058 2.389 1 69.06 ? C17 ZZK 1513 A 1 HETATM 18 O O18 ZZK . . . B 2 40.245 -32.552 3.519 1 74.93 ? O18 ZZK 1513 A 1 HETATM 19 C C19 ZZK . . . B 2 40.115 -31.603 4.44 1 74.33 ? C19 ZZK 1513 A 1 HETATM 20 C C20 ZZK . . . B 2 38.251 -33.644 5.149 1 61.23 ? C20 ZZK 1513 A 1 HETATM 21 N N21 ZZK . . . B 2 37.375 -34.63 5.52 1 59.37 ? N21 ZZK 1513 A 1 HETATM 22 C C22 ZZK . . . B 2 36.798 -34.625 6.762 1 57.35 ? C22 ZZK 1513 A 1 HETATM 23 N N23 ZZK . . . B 2 35.864 -35.677 7.112 1 53.52 ? N23 ZZK 1513 A 1 HETATM 24 C C24 ZZK . . . B 2 36.389 -34.74 9.715 1 61.52 ? C24 ZZK 1513 A 1 HETATM 25 C C25 ZZK . . . B 2 35.801 -34.687 10.988 1 57.02 ? C25 ZZK 1513 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #