data_2WTH # _model_server_result.job_id o_MYDlZZblLIWinxolCkyQ _model_server_result.datetime_utc '2025-07-24 23:16:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":160}' # _entry.id 2WTH # _exptl.entry_id 2WTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WTH _cell.length_a 77.681 _cell.length_b 77.681 _cell.length_c 145.64 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 C FE HEM . A HEM 160 1_555 D O2 OXY . A OXY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 H FE HEM . B HEM 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc4 H FE HEM . B HEM 160 1_555 I O2 OXY . B OXY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 2WTH _atom_sites.fract_transf_matrix[1][1] 0.012873 _atom_sites.fract_transf_matrix[1][2] 0.007432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 160 160 HEM HEM . D 3 OXY A 1 161 161 OXY OXY . E 4 SO4 A 1 1160 1160 SO4 SO4 . F 5 GOL A 1 1161 1161 GOL GOL . G 5 GOL A 1 1162 1162 GOL GOL . H 2 HEM B 1 160 160 HEM HEM . I 3 OXY B 1 161 161 OXY OXY . J 4 SO4 B 1 1160 1160 SO4 SO4 . K 5 GOL B 1 1161 1161 GOL GOL . L 5 GOL B 1 1162 1162 GOL GOL . M 4 SO4 B 1 1163 1163 SO4 SO4 . N 5 GOL B 1 1164 1164 GOL GOL . O 5 GOL B 1 1165 1165 GOL GOL . P 6 HOH A 1 2001 2001 HOH HOH . P 6 HOH A 2 2002 2002 HOH HOH . P 6 HOH A 3 2003 2003 HOH HOH . P 6 HOH A 4 2004 2004 HOH HOH . P 6 HOH A 5 2005 2005 HOH HOH . P 6 HOH A 6 2006 2006 HOH HOH . P 6 HOH A 7 2007 2007 HOH HOH . P 6 HOH A 8 2008 2008 HOH HOH . P 6 HOH A 9 2009 2009 HOH HOH . P 6 HOH A 10 2010 2010 HOH HOH . P 6 HOH A 11 2011 2011 HOH HOH . P 6 HOH A 12 2012 2012 HOH HOH . P 6 HOH A 13 2013 2013 HOH HOH . P 6 HOH A 14 2014 2014 HOH HOH . P 6 HOH A 15 2015 2015 HOH HOH . P 6 HOH A 16 2016 2016 HOH HOH . P 6 HOH A 17 2017 2017 HOH HOH . P 6 HOH A 18 2018 2018 HOH HOH . P 6 HOH A 19 2019 2019 HOH HOH . P 6 HOH A 20 2020 2020 HOH HOH . P 6 HOH A 21 2021 2021 HOH HOH . Q 6 HOH B 1 2001 2001 HOH HOH . Q 6 HOH B 2 2002 2002 HOH HOH . Q 6 HOH B 3 2003 2003 HOH HOH . Q 6 HOH B 4 2004 2004 HOH HOH . Q 6 HOH B 5 2005 2005 HOH HOH . Q 6 HOH B 6 2006 2006 HOH HOH . Q 6 HOH B 7 2007 2007 HOH HOH . Q 6 HOH B 8 2008 2008 HOH HOH . Q 6 HOH B 9 2009 2009 HOH HOH . Q 6 HOH B 10 2010 2010 HOH HOH . Q 6 HOH B 11 2011 2011 HOH HOH . Q 6 HOH B 12 2012 2012 HOH HOH . Q 6 HOH B 13 2013 2013 HOH HOH . Q 6 HOH B 14 2014 2014 HOH HOH . Q 6 HOH B 15 2015 2015 HOH HOH . Q 6 HOH B 16 2016 2016 HOH HOH . Q 6 HOH B 17 2017 2017 HOH HOH . Q 6 HOH B 18 2018 2018 HOH HOH . Q 6 HOH B 19 2019 2019 HOH HOH . Q 6 HOH B 20 2020 2020 HOH HOH . Q 6 HOH B 21 2021 2021 HOH HOH . Q 6 HOH B 22 2022 2022 HOH HOH . Q 6 HOH B 23 2023 2023 HOH HOH . Q 6 HOH B 24 2024 2024 HOH HOH . Q 6 HOH B 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 26.25 -22.324 -2.596 1 52.96 ? CHA HEM 160 A 1 HETATM 2 C CHB HEM . . . C 2 27.378 -21.985 -7.301 1 52.89 ? CHB HEM 160 A 1 HETATM 3 C CHC HEM . . . C 2 30.235 -18.177 -6.405 1 52.14 ? CHC HEM 160 A 1 HETATM 4 C CHD HEM . . . C 2 29.075 -18.415 -1.703 1 52.56 ? CHD HEM 160 A 1 HETATM 5 C C1A HEM . . . C 2 26.265 -22.559 -3.953 1 53.37 ? C1A HEM 160 A 1 HETATM 6 C C2A HEM . . . C 2 25.475 -23.545 -4.673 1 54.64 ? C2A HEM 160 A 1 HETATM 7 C C3A HEM . . . C 2 25.8 -23.44 -5.974 1 53.87 ? C3A HEM 160 A 1 HETATM 8 C C4A HEM . . . C 2 26.795 -22.395 -6.119 1 53.14 ? C4A HEM 160 A 1 HETATM 9 C CMA HEM . . . C 2 25.229 -24.281 -7.142 1 53.9 ? CMA HEM 160 A 1 HETATM 10 C CAA HEM . . . C 2 24.447 -24.535 -4.046 1 55.58 ? CAA HEM 160 A 1 HETATM 11 C CBA HEM . . . C 2 23.023 -24.072 -4.356 1 58.97 ? CBA HEM 160 A 1 HETATM 12 C CGA HEM . . . C 2 22.011 -25.172 -4.139 1 61.41 ? CGA HEM 160 A 1 HETATM 13 O O1A HEM . . . C 2 22.153 -26.283 -4.731 1 63.39 ? O1A HEM 160 A 1 HETATM 14 O O2A HEM . . . C 2 21.035 -24.937 -3.374 1 62.88 ? O2A HEM 160 A 1 HETATM 15 C C1B HEM . . . C 2 28.249 -20.933 -7.473 1 51.95 ? C1B HEM 160 A 1 HETATM 16 C C2B HEM . . . C 2 28.841 -20.502 -8.728 1 52.31 ? C2B HEM 160 A 1 HETATM 17 C C3B HEM . . . C 2 29.631 -19.452 -8.474 1 52.21 ? C3B HEM 160 A 1 HETATM 18 C C4B HEM . . . C 2 29.567 -19.185 -7.056 1 51.83 ? C4B HEM 160 A 1 HETATM 19 C CMB HEM . . . C 2 28.607 -21.142 -10.117 1 51.68 ? CMB HEM 160 A 1 HETATM 20 C CAB HEM . . . C 2 30.478 -18.661 -9.503 1 52.5 ? CAB HEM 160 A 1 HETATM 21 C CBB HEM . . . C 2 30.155 -17.41 -9.862 1 53.19 ? CBB HEM 160 A 1 HETATM 22 C C1C HEM . . . C 2 30.209 -17.938 -5.053 1 51.49 ? C1C HEM 160 A 1 HETATM 23 C C2C HEM . . . C 2 31.036 -16.991 -4.345 1 52.21 ? C2C HEM 160 A 1 HETATM 24 C C3C HEM . . . C 2 30.717 -17.056 -3.047 1 52.24 ? C3C HEM 160 A 1 HETATM 25 C C4C HEM . . . C 2 29.681 -18.053 -2.888 1 51.83 ? C4C HEM 160 A 1 HETATM 26 C CMC HEM . . . C 2 32.099 -16.073 -4.994 1 52 ? CMC HEM 160 A 1 HETATM 27 C CAC HEM . . . C 2 31.343 -16.225 -1.904 1 52.07 ? CAC HEM 160 A 1 HETATM 28 C CBC HEM . . . C 2 31.062 -14.922 -1.796 1 52.75 ? CBC HEM 160 A 1 HETATM 29 C C1D HEM . . . C 2 28.193 -19.457 -1.499 1 52.57 ? C1D HEM 160 A 1 HETATM 30 C C2D HEM . . . C 2 27.581 -19.783 -0.231 1 52.62 ? C2D HEM 160 A 1 HETATM 31 C C3D HEM . . . C 2 26.7 -21.017 -0.509 1 52.93 ? C3D HEM 160 A 1 HETATM 32 C C4D HEM . . . C 2 26.873 -21.292 -1.918 1 52.53 ? C4D HEM 160 A 1 HETATM 33 C CMD HEM . . . C 2 27.795 -19.03 1.1 1 52.14 ? CMD HEM 160 A 1 HETATM 34 C CAD HEM . . . C 2 25.79 -21.825 0.453 1 53.41 ? CAD HEM 160 A 1 HETATM 35 C CBD HEM . . . C 2 26.373 -22.055 1.851 1 55.39 ? CBD HEM 160 A 1 HETATM 36 C CGD HEM . . . C 2 27.756 -22.657 1.854 1 56.05 ? CGD HEM 160 A 1 HETATM 37 O O1D HEM . . . C 2 28.024 -23.614 1.083 1 56.46 ? O1D HEM 160 A 1 HETATM 38 O O2D HEM . . . C 2 28.598 -22.175 2.654 1 57.22 ? O2D HEM 160 A 1 HETATM 39 N NA HEM . . . C 2 27.054 -21.881 -4.864 1 52.85 ? NA HEM 160 A 1 HETATM 40 N NB HEM . . . C 2 28.718 -20.105 -6.47 1 51.73 ? NB HEM 160 A 1 HETATM 41 N NC HEM . . . C 2 29.394 -18.567 -4.136 1 51.83 ? NC HEM 160 A 1 HETATM 42 N ND HEM . . . C 2 27.752 -20.359 -2.459 1 51.64 ? ND HEM 160 A 1 HETATM 43 FE FE HEM . . . C 2 28.309 -20.236 -4.422 1 51.12 ? FE HEM 160 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #