data_2WTH
#
_model_server_result.job_id            jPKUF5uWB6U8mIcrXPNFrQ 
_model_server_result.datetime_utc      '2025-07-26 21:33:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wth 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":160}' 
#
_entry.id    2WTH 
#
_exptl.entry_id    2WTH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2WTH 
_cell.length_a            77.681 
_cell.length_b            77.681 
_cell.length_c            145.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WTH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc2 C FE HEM . A HEM 160 1_555 D O2 OXY . A OXY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 H FE HEM . B HEM 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 H FE HEM . B HEM 160 1_555 I O2 OXY . B OXY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 142 n n 
CHA C4D HEM doub 143 n n 
CHA HHA HEM sing 144 n n 
CHB C4A HEM sing 145 n n 
CHB C1B HEM doub 146 n n 
CHB HHB HEM sing 147 n n 
CHC C4B HEM sing 148 n n 
CHC C1C HEM doub 149 n n 
CHC HHC HEM sing 150 n n 
CHD C4C HEM doub 151 n n 
CHD C1D HEM sing 152 n n 
CHD HHD HEM sing 153 n n 
C1A C2A HEM doub 154 n y 
C1A NA HEM sing 155 n y 
C2A C3A HEM sing 156 n y 
C2A CAA HEM sing 157 n n 
C3A C4A HEM doub 158 n y 
C3A CMA HEM sing 159 n n 
C4A NA HEM sing 160 n y 
CMA HMA HEM sing 161 n n 
CMA HMAA HEM sing 162 n n 
CMA HMAB HEM sing 163 n n 
CAA CBA HEM sing 164 n n 
CAA HAA HEM sing 165 n n 
CAA HAAA HEM sing 166 n n 
CBA CGA HEM sing 167 n n 
CBA HBA HEM sing 168 n n 
CBA HBAA HEM sing 169 n n 
CGA O1A HEM doub 170 n n 
CGA O2A HEM sing 171 n n 
C1B C2B HEM sing 172 n n 
C1B NB HEM sing 173 n n 
C2B C3B HEM doub 174 n n 
C2B CMB HEM sing 175 n n 
C3B C4B HEM sing 176 n n 
C3B CAB HEM sing 177 n n 
C4B NB HEM doub 178 n n 
CMB HMB HEM sing 179 n n 
CMB HMBA HEM sing 180 n n 
CMB HMBB HEM sing 181 n n 
CAB CBB HEM doub 182 n n 
CAB HAB HEM sing 183 n n 
CBB HBB HEM sing 184 n n 
CBB HBBA HEM sing 185 n n 
C1C C2C HEM sing 186 n y 
C1C NC HEM sing 187 n y 
C2C C3C HEM doub 188 n y 
C2C CMC HEM sing 189 n n 
C3C C4C HEM sing 190 n y 
C3C CAC HEM sing 191 n n 
C4C NC HEM sing 192 n y 
CMC HMC HEM sing 193 n n 
CMC HMCA HEM sing 194 n n 
CMC HMCB HEM sing 195 n n 
CAC CBC HEM doub 196 n n 
CAC HAC HEM sing 197 n n 
CBC HBC HEM sing 198 n n 
CBC HBCA HEM sing 199 n n 
C1D C2D HEM sing 200 n n 
C1D ND HEM doub 201 n n 
C2D C3D HEM doub 202 n n 
C2D CMD HEM sing 203 n n 
C3D C4D HEM sing 204 n n 
C3D CAD HEM sing 205 n n 
C4D ND HEM sing 206 n n 
CMD HMD HEM sing 207 n n 
CMD HMDA HEM sing 208 n n 
CMD HMDB HEM sing 209 n n 
CAD CBD HEM sing 210 n n 
CAD HAD HEM sing 211 n n 
CAD HADA HEM sing 212 n n 
CBD CGD HEM sing 213 n n 
CBD HBD HEM sing 214 n n 
CBD HBDA HEM sing 215 n n 
CGD O1D HEM doub 216 n n 
CGD O2D HEM sing 217 n n 
O2A H2A HEM sing 218 n n 
O2D H2D HEM sing 219 n n 
FE NA HEM sing 220 n n 
FE NB HEM sing 221 n n 
FE NC HEM sing 222 n n 
FE ND HEM sing 223 n n 
#
_atom_sites.entry_id                     2WTH 
_atom_sites.fract_transf_matrix[1][1]    0.012873 
_atom_sites.fract_transf_matrix[1][2]    0.007432 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014865 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006866 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 160 160 HEM HEM . 
D 3 OXY A 1 161 161 OXY OXY . 
E 4 SO4 A 1 1160 1160 SO4 SO4 . 
F 5 GOL A 1 1161 1161 GOL GOL . 
G 5 GOL A 1 1162 1162 GOL GOL . 
H 2 HEM B 1 160 160 HEM HEM . 
I 3 OXY B 1 161 161 OXY OXY . 
J 4 SO4 B 1 1160 1160 SO4 SO4 . 
K 5 GOL B 1 1161 1161 GOL GOL . 
L 5 GOL B 1 1162 1162 GOL GOL . 
M 4 SO4 B 1 1163 1163 SO4 SO4 . 
N 5 GOL B 1 1164 1164 GOL GOL . 
O 5 GOL B 1 1165 1165 GOL GOL . 
P 6 HOH A 1 2001 2001 HOH HOH . 
P 6 HOH A 2 2002 2002 HOH HOH . 
P 6 HOH A 3 2003 2003 HOH HOH . 
P 6 HOH A 4 2004 2004 HOH HOH . 
P 6 HOH A 5 2005 2005 HOH HOH . 
P 6 HOH A 6 2006 2006 HOH HOH . 
P 6 HOH A 7 2007 2007 HOH HOH . 
P 6 HOH A 8 2008 2008 HOH HOH . 
P 6 HOH A 9 2009 2009 HOH HOH . 
P 6 HOH A 10 2010 2010 HOH HOH . 
P 6 HOH A 11 2011 2011 HOH HOH . 
P 6 HOH A 12 2012 2012 HOH HOH . 
P 6 HOH A 13 2013 2013 HOH HOH . 
P 6 HOH A 14 2014 2014 HOH HOH . 
P 6 HOH A 15 2015 2015 HOH HOH . 
P 6 HOH A 16 2016 2016 HOH HOH . 
P 6 HOH A 17 2017 2017 HOH HOH . 
P 6 HOH A 18 2018 2018 HOH HOH . 
P 6 HOH A 19 2019 2019 HOH HOH . 
P 6 HOH A 20 2020 2020 HOH HOH . 
P 6 HOH A 21 2021 2021 HOH HOH . 
Q 6 HOH B 1 2001 2001 HOH HOH . 
Q 6 HOH B 2 2002 2002 HOH HOH . 
Q 6 HOH B 3 2003 2003 HOH HOH . 
Q 6 HOH B 4 2004 2004 HOH HOH . 
Q 6 HOH B 5 2005 2005 HOH HOH . 
Q 6 HOH B 6 2006 2006 HOH HOH . 
Q 6 HOH B 7 2007 2007 HOH HOH . 
Q 6 HOH B 8 2008 2008 HOH HOH . 
Q 6 HOH B 9 2009 2009 HOH HOH . 
Q 6 HOH B 10 2010 2010 HOH HOH . 
Q 6 HOH B 11 2011 2011 HOH HOH . 
Q 6 HOH B 12 2012 2012 HOH HOH . 
Q 6 HOH B 13 2013 2013 HOH HOH . 
Q 6 HOH B 14 2014 2014 HOH HOH . 
Q 6 HOH B 15 2015 2015 HOH HOH . 
Q 6 HOH B 16 2016 2016 HOH HOH . 
Q 6 HOH B 17 2017 2017 HOH HOH . 
Q 6 HOH B 18 2018 2018 HOH HOH . 
Q 6 HOH B 19 2019 2019 HOH HOH . 
Q 6 HOH B 20 2020 2020 HOH HOH . 
Q 6 HOH B 21 2021 2021 HOH HOH . 
Q 6 HOH B 22 2022 2022 HOH HOH . 
Q 6 HOH B 23 2023 2023 HOH HOH . 
Q 6 HOH B 24 2024 2024 HOH HOH . 
Q 6 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 26.25 -22.324 -2.596 1 52.96 ? CHA HEM 160 A 1 
HETATM 2 C CHB HEM . . . C 2 27.378 -21.985 -7.301 1 52.89 ? CHB HEM 160 A 1 
HETATM 3 C CHC HEM . . . C 2 30.235 -18.177 -6.405 1 52.14 ? CHC HEM 160 A 1 
HETATM 4 C CHD HEM . . . C 2 29.075 -18.415 -1.703 1 52.56 ? CHD HEM 160 A 1 
HETATM 5 C C1A HEM . . . C 2 26.265 -22.559 -3.953 1 53.37 ? C1A HEM 160 A 1 
HETATM 6 C C2A HEM . . . C 2 25.475 -23.545 -4.673 1 54.64 ? C2A HEM 160 A 1 
HETATM 7 C C3A HEM . . . C 2 25.8 -23.44 -5.974 1 53.87 ? C3A HEM 160 A 1 
HETATM 8 C C4A HEM . . . C 2 26.795 -22.395 -6.119 1 53.14 ? C4A HEM 160 A 1 
HETATM 9 C CMA HEM . . . C 2 25.229 -24.281 -7.142 1 53.9 ? CMA HEM 160 A 1 
HETATM 10 C CAA HEM . . . C 2 24.447 -24.535 -4.046 1 55.58 ? CAA HEM 160 A 1 
HETATM 11 C CBA HEM . . . C 2 23.023 -24.072 -4.356 1 58.97 ? CBA HEM 160 A 1 
HETATM 12 C CGA HEM . . . C 2 22.011 -25.172 -4.139 1 61.41 ? CGA HEM 160 A 1 
HETATM 13 O O1A HEM . . . C 2 22.153 -26.283 -4.731 1 63.39 ? O1A HEM 160 A 1 
HETATM 14 O O2A HEM . . . C 2 21.035 -24.937 -3.374 1 62.88 ? O2A HEM 160 A 1 
HETATM 15 C C1B HEM . . . C 2 28.249 -20.933 -7.473 1 51.95 ? C1B HEM 160 A 1 
HETATM 16 C C2B HEM . . . C 2 28.841 -20.502 -8.728 1 52.31 ? C2B HEM 160 A 1 
HETATM 17 C C3B HEM . . . C 2 29.631 -19.452 -8.474 1 52.21 ? C3B HEM 160 A 1 
HETATM 18 C C4B HEM . . . C 2 29.567 -19.185 -7.056 1 51.83 ? C4B HEM 160 A 1 
HETATM 19 C CMB HEM . . . C 2 28.607 -21.142 -10.117 1 51.68 ? CMB HEM 160 A 1 
HETATM 20 C CAB HEM . . . C 2 30.478 -18.661 -9.503 1 52.5 ? CAB HEM 160 A 1 
HETATM 21 C CBB HEM . . . C 2 30.155 -17.41 -9.862 1 53.19 ? CBB HEM 160 A 1 
HETATM 22 C C1C HEM . . . C 2 30.209 -17.938 -5.053 1 51.49 ? C1C HEM 160 A 1 
HETATM 23 C C2C HEM . . . C 2 31.036 -16.991 -4.345 1 52.21 ? C2C HEM 160 A 1 
HETATM 24 C C3C HEM . . . C 2 30.717 -17.056 -3.047 1 52.24 ? C3C HEM 160 A 1 
HETATM 25 C C4C HEM . . . C 2 29.681 -18.053 -2.888 1 51.83 ? C4C HEM 160 A 1 
HETATM 26 C CMC HEM . . . C 2 32.099 -16.073 -4.994 1 52 ? CMC HEM 160 A 1 
HETATM 27 C CAC HEM . . . C 2 31.343 -16.225 -1.904 1 52.07 ? CAC HEM 160 A 1 
HETATM 28 C CBC HEM . . . C 2 31.062 -14.922 -1.796 1 52.75 ? CBC HEM 160 A 1 
HETATM 29 C C1D HEM . . . C 2 28.193 -19.457 -1.499 1 52.57 ? C1D HEM 160 A 1 
HETATM 30 C C2D HEM . . . C 2 27.581 -19.783 -0.231 1 52.62 ? C2D HEM 160 A 1 
HETATM 31 C C3D HEM . . . C 2 26.7 -21.017 -0.509 1 52.93 ? C3D HEM 160 A 1 
HETATM 32 C C4D HEM . . . C 2 26.873 -21.292 -1.918 1 52.53 ? C4D HEM 160 A 1 
HETATM 33 C CMD HEM . . . C 2 27.795 -19.03 1.1 1 52.14 ? CMD HEM 160 A 1 
HETATM 34 C CAD HEM . . . C 2 25.79 -21.825 0.453 1 53.41 ? CAD HEM 160 A 1 
HETATM 35 C CBD HEM . . . C 2 26.373 -22.055 1.851 1 55.39 ? CBD HEM 160 A 1 
HETATM 36 C CGD HEM . . . C 2 27.756 -22.657 1.854 1 56.05 ? CGD HEM 160 A 1 
HETATM 37 O O1D HEM . . . C 2 28.024 -23.614 1.083 1 56.46 ? O1D HEM 160 A 1 
HETATM 38 O O2D HEM . . . C 2 28.598 -22.175 2.654 1 57.22 ? O2D HEM 160 A 1 
HETATM 39 N NA HEM . . . C 2 27.054 -21.881 -4.864 1 52.85 ? NA HEM 160 A 1 
HETATM 40 N NB HEM . . . C 2 28.718 -20.105 -6.47 1 51.73 ? NB HEM 160 A 1 
HETATM 41 N NC HEM . . . C 2 29.394 -18.567 -4.136 1 51.83 ? NC HEM 160 A 1 
HETATM 42 N ND HEM . . . C 2 27.752 -20.359 -2.459 1 51.64 ? ND HEM 160 A 1 
HETATM 43 FE FE HEM . . . C 2 28.309 -20.236 -4.422 1 51.12 ? FE HEM 160 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#