data_2WTK # _model_server_result.job_id mjMwSRVyvaIGSlhCueRLaw _model_server_result.datetime_utc '2024-11-09 02:26:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2}' # _entry.id 2WTK # _exptl.entry_id 2WTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WTK _cell.length_a 118.36 _cell.length_b 118.36 _cell.length_c 390.012 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,I,J,K,O,P,Q 1 1 A,B,C,G,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 K N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2WTK _atom_sites.fract_transf_matrix[1][1] 0.008449 _atom_sites.fract_transf_matrix[1][2] 0.004878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ANP B 1 432 432 ANP ANP . H 4 ANP C 1 2 2 ANP ANP . I 5 SO4 D 1 342 342 SO4 SO4 . J 4 ANP E 1 432 432 ANP ANP . K 4 ANP F 1 4 4 ANP ANP . L 6 HOH A 1 2001 2001 HOH HOH . L 6 HOH A 2 2002 2002 HOH HOH . L 6 HOH A 3 2003 2003 HOH HOH . L 6 HOH A 4 2004 2004 HOH HOH . L 6 HOH A 5 2005 2005 HOH HOH . L 6 HOH A 6 2006 2006 HOH HOH . L 6 HOH A 7 2007 2007 HOH HOH . L 6 HOH A 8 2008 2008 HOH HOH . L 6 HOH A 9 2009 2009 HOH HOH . L 6 HOH A 10 2010 2010 HOH HOH . L 6 HOH A 11 2011 2011 HOH HOH . L 6 HOH A 12 2012 2012 HOH HOH . L 6 HOH A 13 2013 2013 HOH HOH . L 6 HOH A 14 2014 2014 HOH HOH . L 6 HOH A 15 2015 2015 HOH HOH . L 6 HOH A 16 2016 2016 HOH HOH . L 6 HOH A 17 2017 2017 HOH HOH . L 6 HOH A 18 2018 2018 HOH HOH . L 6 HOH A 19 2019 2019 HOH HOH . L 6 HOH A 20 2020 2020 HOH HOH . L 6 HOH A 21 2021 2021 HOH HOH . L 6 HOH A 22 2022 2022 HOH HOH . L 6 HOH A 23 2023 2023 HOH HOH . L 6 HOH A 24 2024 2024 HOH HOH . M 6 HOH B 1 2001 2001 HOH HOH . M 6 HOH B 2 2002 2002 HOH HOH . M 6 HOH B 3 2003 2003 HOH HOH . M 6 HOH B 4 2004 2004 HOH HOH . M 6 HOH B 5 2005 2005 HOH HOH . M 6 HOH B 6 2006 2006 HOH HOH . M 6 HOH B 7 2007 2007 HOH HOH . M 6 HOH B 8 2008 2008 HOH HOH . N 6 HOH C 1 2001 2001 HOH HOH . N 6 HOH C 2 2002 2002 HOH HOH . N 6 HOH C 3 2003 2003 HOH HOH . N 6 HOH C 4 2004 2004 HOH HOH . N 6 HOH C 5 2005 2005 HOH HOH . N 6 HOH C 6 2006 2006 HOH HOH . N 6 HOH C 7 2007 2007 HOH HOH . N 6 HOH C 8 2008 2008 HOH HOH . N 6 HOH C 9 2009 2009 HOH HOH . N 6 HOH C 10 2010 2010 HOH HOH . N 6 HOH C 11 2011 2011 HOH HOH . N 6 HOH C 12 2012 2012 HOH HOH . N 6 HOH C 13 2013 2013 HOH HOH . N 6 HOH C 14 2014 2014 HOH HOH . N 6 HOH C 15 2015 2015 HOH HOH . N 6 HOH C 16 2016 2016 HOH HOH . N 6 HOH C 17 2017 2017 HOH HOH . N 6 HOH C 18 2018 2018 HOH HOH . O 6 HOH D 1 2001 2001 HOH HOH . O 6 HOH D 2 2002 2002 HOH HOH . O 6 HOH D 3 2003 2003 HOH HOH . O 6 HOH D 4 2004 2004 HOH HOH . O 6 HOH D 5 2005 2005 HOH HOH . O 6 HOH D 6 2006 2006 HOH HOH . O 6 HOH D 7 2007 2007 HOH HOH . O 6 HOH D 8 2008 2008 HOH HOH . O 6 HOH D 9 2009 2009 HOH HOH . O 6 HOH D 10 2010 2010 HOH HOH . O 6 HOH D 11 2011 2011 HOH HOH . O 6 HOH D 12 2012 2012 HOH HOH . O 6 HOH D 13 2013 2013 HOH HOH . O 6 HOH D 14 2014 2014 HOH HOH . O 6 HOH D 15 2015 2015 HOH HOH . O 6 HOH D 16 2016 2016 HOH HOH . O 6 HOH D 17 2017 2017 HOH HOH . O 6 HOH D 18 2018 2018 HOH HOH . O 6 HOH D 19 2019 2019 HOH HOH . O 6 HOH D 20 2020 2020 HOH HOH . O 6 HOH D 21 2021 2021 HOH HOH . O 6 HOH D 22 2022 2022 HOH HOH . O 6 HOH D 23 2023 2023 HOH HOH . O 6 HOH D 24 2024 2024 HOH HOH . O 6 HOH D 25 2025 2025 HOH HOH . O 6 HOH D 26 2026 2026 HOH HOH . P 6 HOH E 1 2001 2001 HOH HOH . P 6 HOH E 2 2002 2002 HOH HOH . P 6 HOH E 3 2003 2003 HOH HOH . P 6 HOH E 4 2004 2004 HOH HOH . P 6 HOH E 5 2005 2005 HOH HOH . P 6 HOH E 6 2006 2006 HOH HOH . P 6 HOH E 7 2007 2007 HOH HOH . P 6 HOH E 8 2008 2008 HOH HOH . P 6 HOH E 9 2009 2009 HOH HOH . P 6 HOH E 10 2010 2010 HOH HOH . P 6 HOH E 11 2011 2011 HOH HOH . P 6 HOH E 12 2012 2012 HOH HOH . P 6 HOH E 13 2013 2013 HOH HOH . P 6 HOH E 14 2014 2014 HOH HOH . P 6 HOH E 15 2015 2015 HOH HOH . P 6 HOH E 16 2016 2016 HOH HOH . P 6 HOH E 17 2017 2017 HOH HOH . P 6 HOH E 18 2018 2018 HOH HOH . Q 6 HOH F 1 2001 2001 HOH HOH . Q 6 HOH F 2 2002 2002 HOH HOH . Q 6 HOH F 3 2003 2003 HOH HOH . Q 6 HOH F 4 2004 2004 HOH HOH . Q 6 HOH F 5 2005 2005 HOH HOH . Q 6 HOH F 6 2006 2006 HOH HOH . Q 6 HOH F 7 2007 2007 HOH HOH . Q 6 HOH F 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . H 4 -73.681 48.478 36.018 1 122.81 ? PB ANP 2 C 1 HETATM 2 O O1B ANP . . . H 4 -72.462 48.935 35.244 1 123.52 ? O1B ANP 2 C 1 HETATM 3 O O2B ANP . . . H 4 -74.25 49.41 37.067 1 121.39 ? O2B ANP 2 C 1 HETATM 4 N N3B ANP . . . H 4 -74.933 48.107 34.851 1 121.35 ? N3B ANP 2 C 1 HETATM 5 P PA ANP . . . H 4 -72.295 47.027 38.031 1 117.86 ? PA ANP 2 C 1 HETATM 6 O O1A ANP . . . H 4 -71.136 46.126 37.651 1 117.06 ? O1A ANP 2 C 1 HETATM 7 O O2A ANP . . . H 4 -72.047 48.42 38.564 1 115.67 ? O2A ANP 2 C 1 HETATM 8 O O3A ANP . . . H 4 -73.285 47.096 36.755 1 119.72 ? O3A ANP 2 C 1 HETATM 9 O O5' ANP . . . H 4 -73.185 46.26 39.13 1 114.32 ? O5' ANP 2 C 1 HETATM 10 C C5' ANP . . . H 4 -74.367 46.846 39.675 1 108.65 ? C5' ANP 2 C 1 HETATM 11 C C4' ANP . . . H 4 -74.789 46.028 40.883 1 105.02 ? C4' ANP 2 C 1 HETATM 12 O O4' ANP . . . H 4 -74.663 44.627 40.603 1 102.66 ? O4' ANP 2 C 1 HETATM 13 C C3' ANP . . . H 4 -73.882 46.307 42.069 1 103.51 ? C3' ANP 2 C 1 HETATM 14 O O3' ANP . . . H 4 -74.407 47.335 42.91 1 103.98 ? O3' ANP 2 C 1 HETATM 15 C C2' ANP . . . H 4 -73.797 44.966 42.773 1 102.28 ? C2' ANP 2 C 1 HETATM 16 O O2' ANP . . . H 4 -74.837 44.83 43.746 1 102.56 ? O2' ANP 2 C 1 HETATM 17 C C1' ANP . . . H 4 -73.994 43.937 41.666 1 99.33 ? C1' ANP 2 C 1 HETATM 18 N N9 ANP . . . H 4 -72.648 43.431 41.26 1 93.51 ? N9 ANP 2 C 1 HETATM 19 C C8 ANP . . . H 4 -71.834 43.959 40.322 1 90.15 ? C8 ANP 2 C 1 HETATM 20 N N7 ANP . . . H 4 -70.672 43.259 40.22 1 88.21 ? N7 ANP 2 C 1 HETATM 21 C C5 ANP . . . H 4 -70.73 42.253 41.109 1 86.14 ? C5 ANP 2 C 1 HETATM 22 C C6 ANP . . . H 4 -69.846 41.138 41.524 1 84.13 ? C6 ANP 2 C 1 HETATM 23 N N6 ANP . . . H 4 -68.638 40.967 40.945 1 84.03 ? N6 ANP 2 C 1 HETATM 24 N N1 ANP . . . H 4 -70.277 40.295 42.492 1 82.89 ? N1 ANP 2 C 1 HETATM 25 C C2 ANP . . . H 4 -71.48 40.465 43.075 1 85.15 ? C2 ANP 2 C 1 HETATM 26 N N3 ANP . . . H 4 -72.335 41.457 42.752 1 87.39 ? N3 ANP 2 C 1 HETATM 27 C C4 ANP . . . H 4 -72.029 42.37 41.793 1 89 ? C4 ANP 2 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #