data_2WVD
#
_model_server_result.job_id            Qdz-NO_E8DIiFepn0jjLEw 
_model_server_result.datetime_utc      '2024-10-18 16:26:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1150}' 
#
_entry.id    2WVD 
#
_exptl.entry_id    2WVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2WVD 
_cell.length_a            49.97 
_cell.length_b            116.98 
_cell.length_c            123.95 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,J,K,L,M,N,O,P,S,T 1 1 
A,B,E,F,G,H,I,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2WVD 
_atom_sites.fract_transf_matrix[1][1]    0.020012 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 1142 1142 SO4 SO4 . 
F 3 GOL A 1 1143 1143 GOL GOL . 
G 2 SO4 B 1 1144 1144 SO4 SO4 . 
H 2 SO4 B 1 1145 1145 SO4 SO4 . 
I 3 GOL B 1 1146 1146 GOL GOL . 
J 2 SO4 C 1 1146 1146 SO4 SO4 . 
K 3 GOL C 1 1147 1147 GOL GOL . 
L 2 SO4 D 1 1146 1146 SO4 SO4 . 
M 2 SO4 D 1 1147 1147 SO4 SO4 . 
N 3 GOL D 1 1148 1148 GOL GOL . 
O 3 GOL D 1 1149 1149 GOL GOL . 
P 3 GOL D 1 1150 1150 GOL GOL . 
Q 4 HOH A 1 2001 2001 HOH HOH . 
Q 4 HOH A 2 2002 2002 HOH HOH . 
Q 4 HOH A 3 2003 2003 HOH HOH . 
Q 4 HOH A 4 2004 2004 HOH HOH . 
Q 4 HOH A 5 2005 2005 HOH HOH . 
Q 4 HOH A 6 2006 2006 HOH HOH . 
Q 4 HOH A 7 2007 2007 HOH HOH . 
Q 4 HOH A 8 2008 2008 HOH HOH . 
Q 4 HOH A 9 2009 2009 HOH HOH . 
R 4 HOH B 1 2001 2001 HOH HOH . 
R 4 HOH B 2 2002 2002 HOH HOH . 
R 4 HOH B 3 2003 2003 HOH HOH . 
R 4 HOH B 4 2004 2004 HOH HOH . 
R 4 HOH B 5 2005 2005 HOH HOH . 
R 4 HOH B 6 2006 2006 HOH HOH . 
R 4 HOH B 7 2007 2007 HOH HOH . 
R 4 HOH B 8 2008 2008 HOH HOH . 
R 4 HOH B 9 2009 2009 HOH HOH . 
R 4 HOH B 10 2010 2010 HOH HOH . 
R 4 HOH B 11 2011 2011 HOH HOH . 
R 4 HOH B 12 2012 2012 HOH HOH . 
R 4 HOH B 13 2013 2013 HOH HOH . 
R 4 HOH B 14 2014 2014 HOH HOH . 
R 4 HOH B 15 2015 2015 HOH HOH . 
R 4 HOH B 16 2016 2016 HOH HOH . 
R 4 HOH B 17 2017 2017 HOH HOH . 
S 4 HOH C 1 2001 2001 HOH HOH . 
S 4 HOH C 2 2002 2002 HOH HOH . 
S 4 HOH C 3 2003 2003 HOH HOH . 
S 4 HOH C 4 2004 2004 HOH HOH . 
S 4 HOH C 5 2005 2005 HOH HOH . 
S 4 HOH C 6 2006 2006 HOH HOH . 
S 4 HOH C 7 2007 2007 HOH HOH . 
S 4 HOH C 8 2008 2008 HOH HOH . 
S 4 HOH C 9 2009 2009 HOH HOH . 
S 4 HOH C 10 2010 2010 HOH HOH . 
S 4 HOH C 11 2011 2011 HOH HOH . 
S 4 HOH C 12 2012 2012 HOH HOH . 
S 4 HOH C 13 2013 2013 HOH HOH . 
S 4 HOH C 14 2014 2014 HOH HOH . 
T 4 HOH D 1 2001 2001 HOH HOH . 
T 4 HOH D 2 2002 2002 HOH HOH . 
T 4 HOH D 3 2003 2003 HOH HOH . 
T 4 HOH D 4 2004 2004 HOH HOH . 
T 4 HOH D 5 2005 2005 HOH HOH . 
T 4 HOH D 6 2006 2006 HOH HOH . 
T 4 HOH D 7 2007 2007 HOH HOH . 
T 4 HOH D 8 2008 2008 HOH HOH . 
T 4 HOH D 9 2009 2009 HOH HOH . 
T 4 HOH D 10 2010 2010 HOH HOH . 
T 4 HOH D 11 2011 2011 HOH HOH . 
T 4 HOH D 12 2012 2012 HOH HOH . 
T 4 HOH D 13 2013 2013 HOH HOH . 
T 4 HOH D 14 2014 2014 HOH HOH . 
T 4 HOH D 15 2015 2015 HOH HOH . 
T 4 HOH D 16 2016 2016 HOH HOH . 
T 4 HOH D 17 2017 2017 HOH HOH . 
T 4 HOH D 18 2018 2018 HOH HOH . 
T 4 HOH D 19 2019 2019 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 3 -1.525 18.434 -30.279 1 84.2 ? C1 GOL 1150 D 1 
HETATM 2 O O1 GOL . . . P 3 -1.834 17.79 -31.494 1 82.29 ? O1 GOL 1150 D 1 
HETATM 3 C C2 GOL . . . P 3 -2.788 18.602 -29.442 1 83.39 ? C2 GOL 1150 D 1 
HETATM 4 O O2 GOL . . . P 3 -3.471 19.759 -29.87 1 79.72 ? O2 GOL 1150 D 1 
HETATM 5 C C3 GOL . . . P 3 -2.428 18.733 -27.963 1 85.6 ? C3 GOL 1150 D 1 
HETATM 6 O O3 GOL . . . P 3 -2.555 20.076 -27.545 1 87.06 ? O3 GOL 1150 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#