data_2WVL # _model_server_result.job_id mSggeFwGMqf5JyERty_T6Q _model_server_result.datetime_utc '2024-11-02 01:20:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1393}' # _entry.id 2WVL # _exptl.entry_id 2WVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WVL _cell.length_a 113.456 _cell.length_b 113.456 _cell.length_c 195.982 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 8 A HIS 8 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 A OE2 GLU 19 A GLU 19 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A OE1 GLU 19 A GLU 19 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 A OD2 ASP 169 A ASP 169 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 A OE1 GLU 251 A GLU 251 1_555 F ZN ZN . A ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 A OE1 GLU 292 A GLU 292 5_645 K ZN ZN . B ZN 1394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 A NE2 HIS 296 A HIS 296 5_645 K ZN ZN . B ZN 1394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc8 A ND1 HIS 309 A HIS 309 1_555 F ZN ZN . A ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc9 A NE2 HIS 311 A HIS 311 1_555 F ZN ZN . A ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 C O1A GDD . A GDD 400 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc11 C O2B GDD . A GDD 400 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc12 E ZN ZN . A ZN 1392 1_555 L O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc13 E ZN ZN . A ZN 1392 1_555 B NE2 HIS 105 B HIS 105 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc14 B NE2 HIS 8 B HIS 8 1_555 I ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 B OE1 GLU 19 B GLU 19 1_555 I ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc16 B OD2 ASP 169 B ASP 169 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc17 B OD2 ASP 242 B ASP 242 1_555 I ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc18 B OD1 ASP 242 B ASP 242 1_555 I ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc19 B OE1 GLU 251 B GLU 251 1_555 J ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc20 B OE2 GLU 292 B GLU 292 1_555 K ZN ZN . B ZN 1394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc21 B OE1 GLU 292 B GLU 292 1_555 K ZN ZN . B ZN 1394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc22 B NE2 HIS 296 B HIS 296 1_555 K ZN ZN . B ZN 1394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc23 B NE2 HIS 311 B HIS 311 1_555 J ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc24 G O2B GDD . B GDD 400 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc25 G O1A GDD . B GDD 400 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc26 J ZN ZN . B ZN 1393 1_555 M O HOH . B HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WVL _atom_sites.fract_transf_matrix[1][1] 0.008814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDD A 1 400 400 GDD GDD . D 3 MG A 1 401 401 MG MG . E 4 ZN A 1 1392 1392 ZN ZN . F 4 ZN A 1 1393 1393 ZN ZN . G 2 GDD B 1 400 400 GDD GDD . H 3 MG B 1 401 401 MG MG . I 4 ZN B 1 1392 1392 ZN ZN . J 4 ZN B 1 1393 1393 ZN ZN . K 4 ZN B 1 1394 1394 ZN ZN . L 5 HOH A 1 2001 2001 HOH HOH . L 5 HOH A 2 2002 2002 HOH HOH . L 5 HOH A 3 2003 2003 HOH HOH . L 5 HOH A 4 2004 2004 HOH HOH . L 5 HOH A 5 2005 2005 HOH HOH . L 5 HOH A 6 2006 2006 HOH HOH . L 5 HOH A 7 2007 2007 HOH HOH . L 5 HOH A 8 2008 2008 HOH HOH . L 5 HOH A 9 2009 2009 HOH HOH . L 5 HOH A 10 2010 2010 HOH HOH . L 5 HOH A 11 2011 2011 HOH HOH . L 5 HOH A 12 2012 2012 HOH HOH . L 5 HOH A 13 2013 2013 HOH HOH . L 5 HOH A 14 2014 2014 HOH HOH . L 5 HOH A 15 2015 2015 HOH HOH . L 5 HOH A 16 2016 2016 HOH HOH . L 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH B 1 2001 2001 HOH HOH . M 5 HOH B 2 2002 2002 HOH HOH . M 5 HOH B 3 2003 2003 HOH HOH . M 5 HOH B 4 2004 2004 HOH HOH . M 5 HOH B 5 2005 2005 HOH HOH . M 5 HOH B 6 2006 2006 HOH HOH . M 5 HOH B 7 2007 2007 HOH HOH . M 5 HOH B 8 2008 2008 HOH HOH . M 5 HOH B 9 2009 2009 HOH HOH . M 5 HOH B 10 2010 2010 HOH HOH . M 5 HOH B 11 2011 2011 HOH HOH . M 5 HOH B 12 2012 2012 HOH HOH . M 5 HOH B 13 2013 2013 HOH HOH . M 5 HOH B 14 2014 2014 HOH HOH . M 5 HOH B 15 2015 2015 HOH HOH . M 5 HOH B 16 2016 2016 HOH HOH . M 5 HOH B 17 2017 2017 HOH HOH . M 5 HOH B 18 2018 2018 HOH HOH . M 5 HOH B 19 2019 2019 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 109.34 _atom_site.Cartn_y -7.34 _atom_site.Cartn_z 23.78 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 117.67 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1393 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #