data_2WVM # _model_server_result.job_id dCcPyqk-qMJgWKQJK7zauQ _model_server_result.datetime_utc '2024-11-01 23:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1392}' # _entry.id 2WVM # _exptl.entry_id 2WVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WVM _cell.length_a 112.766 _cell.length_b 112.766 _cell.length_c 199.69 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 8 A HIS 8 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 A OE2 GLU 19 A GLU 19 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A OE1 GLU 19 A GLU 19 1_555 E ZN ZN . A ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A OD2 ASP 169 A ASP 169 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 A OE1 GLU 292 A GLU 292 6_544 I ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 A NE2 HIS 296 A HIS 296 6_544 I ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc7 C O2B GDD . A GDD 400 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc8 C O1A GDD . A GDD 400 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc9 E ZN ZN . A ZN 1392 1_555 J O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc10 E ZN ZN . A ZN 1392 1_555 B NE2 HIS 105 B HIS 105 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc11 B NE2 HIS 8 B HIS 8 1_555 H ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc12 B OE1 GLU 19 B GLU 19 1_555 H ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc13 B OD1 ASP 169 B ASP 169 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc14 B OD2 ASP 169 B ASP 169 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc15 B OD1 ASP 242 B ASP 242 1_555 H ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc16 B OD2 ASP 242 B ASP 242 1_555 H ZN ZN . B ZN 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc17 B OE2 GLU 292 B GLU 292 1_555 I ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc18 B OE1 GLU 292 B GLU 292 1_555 I ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 B NE2 HIS 296 B HIS 296 1_555 I ZN ZN . B ZN 1393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc20 F O1A GDD . B GDD 400 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc21 F O2B GDD . B GDD 400 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc22 H ZN ZN . B ZN 1392 1_555 K O HOH . B HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WVM _atom_sites.fract_transf_matrix[1][1] 0.008868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDD A 1 400 400 GDD GDD . D 3 MG A 1 401 401 MG MG . E 4 ZN A 1 1392 1392 ZN ZN . F 2 GDD B 1 400 400 GDD GDD . G 3 MG B 1 401 401 MG MG . H 4 ZN B 1 1392 1392 ZN ZN . I 4 ZN B 1 1393 1393 ZN ZN . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.631 _atom_site.Cartn_y -5.313 _atom_site.Cartn_z -0.145 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.12 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1392 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #