data_2WWD # _model_server_result.job_id 9KnOJOZpPOz-Lypl6TF8Ug _model_server_result.datetime_utc '2024-11-23 23:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":606}' # _entry.id 2WWD # _exptl.entry_id 2WWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.77 _cell.angle_gamma 90 _cell.entry_id 2WWD _cell.length_a 59.4 _cell.length_b 66.87 _cell.length_c 77.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 MUB _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B MUB 1 B 1 MUB A 470 MU2 2 n B NAG 2 B 2 NAG A 469 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 Q C ALA . A ALA 617 1_555 R N GLN . A GLN 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 sing covale ? covale2 Q N ALA . A ALA 617 1_555 B C10 MUB . B MUB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing covale ? covale3 B O4 MUB . B MUB 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 2WWD _atom_sites.fract_transf_matrix[1][1] 0.016835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 601 601 GOL GOL . D 3 GOL A 1 602 602 GOL GOL . E 3 GOL A 1 603 603 GOL GOL . F 3 GOL A 1 604 604 GOL GOL . G 3 GOL A 1 605 605 GOL GOL . H 3 GOL A 1 606 606 GOL GOL . I 3 GOL A 1 607 607 GOL GOL . J 4 CHT A 1 608 701 CHT CHT . K 4 CHT A 1 609 702 CHT CHT . L 4 CHT A 1 610 703 CHT CHT . M 4 CHT A 1 611 704 CHT CHT . N 4 CHT A 1 612 705 CHT CHT . O 4 CHT A 1 613 706 CHT CHT . P 4 CHT A 1 614 707 CHT CHT . Q 5 ALA A 1 617 470 ALA MU2 . R 6 GLN A 1 618 470 GLN MU2 . S 7 HOH A 1 701 2048 HOH HOH . S 7 HOH A 2 702 2020 HOH HOH . S 7 HOH A 3 703 2010 HOH HOH . S 7 HOH A 4 704 2110 HOH HOH . S 7 HOH A 5 705 2103 HOH HOH . S 7 HOH A 6 706 2038 HOH HOH . S 7 HOH A 7 707 2105 HOH HOH . S 7 HOH A 8 708 2124 HOH HOH . S 7 HOH A 9 709 2116 HOH HOH . S 7 HOH A 10 710 2101 HOH HOH . S 7 HOH A 11 711 2091 HOH HOH . S 7 HOH A 12 712 2054 HOH HOH . S 7 HOH A 13 713 2034 HOH HOH . S 7 HOH A 14 714 2072 HOH HOH . S 7 HOH A 15 715 2065 HOH HOH . S 7 HOH A 16 716 2067 HOH HOH . S 7 HOH A 17 717 2104 HOH HOH . S 7 HOH A 18 718 2064 HOH HOH . S 7 HOH A 19 719 2135 HOH HOH . S 7 HOH A 20 720 2017 HOH HOH . S 7 HOH A 21 721 2107 HOH HOH . S 7 HOH A 22 722 2039 HOH HOH . S 7 HOH A 23 723 2005 HOH HOH . S 7 HOH A 24 724 2083 HOH HOH . S 7 HOH A 25 725 2071 HOH HOH . S 7 HOH A 26 726 2044 HOH HOH . S 7 HOH A 27 727 2026 HOH HOH . S 7 HOH A 28 728 2078 HOH HOH . S 7 HOH A 29 729 2098 HOH HOH . S 7 HOH A 30 730 2096 HOH HOH . S 7 HOH A 31 731 2059 HOH HOH . S 7 HOH A 32 732 2040 HOH HOH . S 7 HOH A 33 733 2035 HOH HOH . S 7 HOH A 34 734 2115 HOH HOH . S 7 HOH A 35 735 2075 HOH HOH . S 7 HOH A 36 736 2095 HOH HOH . S 7 HOH A 37 737 2077 HOH HOH . S 7 HOH A 38 738 2045 HOH HOH . S 7 HOH A 39 739 2004 HOH HOH . S 7 HOH A 40 740 2066 HOH HOH . S 7 HOH A 41 741 2051 HOH HOH . S 7 HOH A 42 742 2090 HOH HOH . S 7 HOH A 43 743 2126 HOH HOH . S 7 HOH A 44 744 2027 HOH HOH . S 7 HOH A 45 745 2073 HOH HOH . S 7 HOH A 46 746 2016 HOH HOH . S 7 HOH A 47 747 2023 HOH HOH . S 7 HOH A 48 748 2120 HOH HOH . S 7 HOH A 49 749 2001 HOH HOH . S 7 HOH A 50 750 2130 HOH HOH . S 7 HOH A 51 751 2018 HOH HOH . S 7 HOH A 52 752 2089 HOH HOH . S 7 HOH A 53 753 2114 HOH HOH . S 7 HOH A 54 754 2118 HOH HOH . S 7 HOH A 55 755 2011 HOH HOH . S 7 HOH A 56 756 2081 HOH HOH . S 7 HOH A 57 757 2117 HOH HOH . S 7 HOH A 58 758 2012 HOH HOH . S 7 HOH A 59 759 2062 HOH HOH . S 7 HOH A 60 760 2070 HOH HOH . S 7 HOH A 61 761 2041 HOH HOH . S 7 HOH A 62 762 2136 HOH HOH . S 7 HOH A 63 763 2019 HOH HOH . S 7 HOH A 64 764 2022 HOH HOH . S 7 HOH A 65 765 2084 HOH HOH . S 7 HOH A 66 766 2076 HOH HOH . S 7 HOH A 67 767 2042 HOH HOH . S 7 HOH A 68 768 2025 HOH HOH . S 7 HOH A 69 769 2125 HOH HOH . S 7 HOH A 70 770 2015 HOH HOH . S 7 HOH A 71 771 2112 HOH HOH . S 7 HOH A 72 772 2049 HOH HOH . S 7 HOH A 73 773 2133 HOH HOH . S 7 HOH A 74 774 2008 HOH HOH . S 7 HOH A 75 775 2131 HOH HOH . S 7 HOH A 76 776 2119 HOH HOH . S 7 HOH A 77 777 2092 HOH HOH . S 7 HOH A 78 778 2043 HOH HOH . S 7 HOH A 79 779 2123 HOH HOH . S 7 HOH A 80 780 2099 HOH HOH . S 7 HOH A 81 781 2087 HOH HOH . S 7 HOH A 82 782 2006 HOH HOH . S 7 HOH A 83 783 2028 HOH HOH . S 7 HOH A 84 784 2132 HOH HOH . S 7 HOH A 85 785 2109 HOH HOH . S 7 HOH A 86 786 2021 HOH HOH . S 7 HOH A 87 787 2079 HOH HOH . S 7 HOH A 88 788 2030 HOH HOH . S 7 HOH A 89 789 2013 HOH HOH . S 7 HOH A 90 790 2056 HOH HOH . S 7 HOH A 91 791 2097 HOH HOH . S 7 HOH A 92 792 2121 HOH HOH . S 7 HOH A 93 793 2108 HOH HOH . S 7 HOH A 94 794 2127 HOH HOH . S 7 HOH A 95 795 2060 HOH HOH . S 7 HOH A 96 796 2033 HOH HOH . S 7 HOH A 97 797 2046 HOH HOH . S 7 HOH A 98 798 2055 HOH HOH . S 7 HOH A 99 799 2053 HOH HOH . S 7 HOH A 100 800 2094 HOH HOH . S 7 HOH A 101 801 2088 HOH HOH . S 7 HOH A 102 802 2086 HOH HOH . S 7 HOH A 103 803 2037 HOH HOH . S 7 HOH A 104 804 2100 HOH HOH . S 7 HOH A 105 805 2003 HOH HOH . S 7 HOH A 106 806 2122 HOH HOH . S 7 HOH A 107 807 2074 HOH HOH . S 7 HOH A 108 808 2068 HOH HOH . S 7 HOH A 109 809 2082 HOH HOH . S 7 HOH A 110 810 2002 HOH HOH . S 7 HOH A 111 811 2058 HOH HOH . S 7 HOH A 112 812 2047 HOH HOH . S 7 HOH A 113 813 2106 HOH HOH . S 7 HOH A 114 814 2032 HOH HOH . S 7 HOH A 115 815 2029 HOH HOH . S 7 HOH A 116 816 2134 HOH HOH . S 7 HOH A 117 817 2061 HOH HOH . S 7 HOH A 118 818 2129 HOH HOH . S 7 HOH A 119 819 2014 HOH HOH . S 7 HOH A 120 820 2031 HOH HOH . S 7 HOH A 121 821 2063 HOH HOH . S 7 HOH A 122 822 2052 HOH HOH . S 7 HOH A 123 823 2111 HOH HOH . S 7 HOH A 124 824 2009 HOH HOH . S 7 HOH A 125 825 2093 HOH HOH . S 7 HOH A 126 826 2128 HOH HOH . S 7 HOH A 127 827 2085 HOH HOH . S 7 HOH A 128 828 2024 HOH HOH . S 7 HOH A 129 829 2036 HOH HOH . S 7 HOH A 130 830 2080 HOH HOH . S 7 HOH A 131 831 2113 HOH HOH . S 7 HOH A 132 832 2102 HOH HOH . S 7 HOH A 133 833 2050 HOH HOH . S 7 HOH A 134 834 2007 HOH HOH . S 7 HOH A 135 835 2069 HOH HOH . S 7 HOH A 136 836 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 43.384 -5.454 26.479 1 74.46 ? C1 GOL 606 A 1 HETATM 2 O O1 GOL . . . H 3 44.553 -5.57 25.691 1 74.36 ? O1 GOL 606 A 1 HETATM 3 C C2 GOL . . . H 3 43.743 -4.875 27.845 1 74.5 ? C2 GOL 606 A 1 HETATM 4 O O2 GOL . . . H 3 42.716 -5.177 28.768 1 74.74 ? O2 GOL 606 A 1 HETATM 5 C C3 GOL . . . H 3 43.87 -3.359 27.741 1 74.26 ? C3 GOL 606 A 1 HETATM 6 O O3 GOL . . . H 3 44.208 -2.86 29.039 1 74.39 ? O3 GOL 606 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #