data_2WWH # _model_server_result.job_id t67RH_v8huQNYdcDPDvC4A _model_server_result.datetime_utc '2024-11-27 04:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":212}' # _entry.id 2WWH # _exptl.entry_id 2WWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WWH _cell.length_a 109.539 _cell.length_b 109.539 _cell.length_c 119.351 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,G,H,I,J,K,M,N 1 1 A,D,E,F,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 19 A ASP 17 1_555 E NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 A OG SER 24 A SER 22 1_555 F NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc3 A OD2 ASP 100 A ASP 98 1_555 F NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 A OE2 GLU 156 A GLU 154 1_555 E NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 D O1B T5A . A T5A 211 1_555 E NA NA . A NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 D O2C T5A . A T5A 211 1_555 F NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc7 D O2D T5A . A T5A 211 1_555 F NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc8 F NA NA . A NA 213 1_555 L O HOH . A HOH 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc9 F NA NA . A NA 213 1_555 L O HOH . A HOH 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc10 B OG SER 24 B SER 22 1_555 H NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc11 B OD2 ASP 100 B ASP 98 1_555 H NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc12 G O2C T5A . B T5A 211 1_555 H NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc13 G O2D T5A . B T5A 211 1_555 H NA NA . B NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc14 C OD1 ASP 19 C ASP 17 1_555 K NA NA . C NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc15 C OG SER 24 C SER 22 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc16 C OD2 ASP 100 C ASP 98 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc17 C OD1 ASP 100 C ASP 98 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc18 C OE2 GLU 156 C GLU 154 1_555 K NA NA . C NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc19 I O2D T5A . C T5A 211 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc20 I O2C T5A . C T5A 211 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc21 I O3B T5A . C T5A 211 1_555 J NA NA . C NA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc22 I O1B T5A . C T5A 211 1_555 K NA NA . C NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc23 I O3A T5A . C T5A 211 1_555 K NA NA . C NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc24 K NA NA . C NA 213 1_555 N O HOH . C HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WWH _atom_sites.fract_transf_matrix[1][1] 0.009129 _atom_sites.fract_transf_matrix[1][2] 0.005271 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 T5A A 1 211 211 T5A T5A . E 3 NA A 1 212 212 NA NA . F 3 NA A 1 213 213 NA NA . G 2 T5A B 1 211 211 T5A T5A . H 3 NA B 1 212 212 NA NA . I 2 T5A C 1 211 211 T5A T5A . J 3 NA C 1 212 212 NA NA . K 3 NA C 1 213 213 NA NA . L 4 HOH A 1 2001 2001 HOH HOH . L 4 HOH A 2 2002 2002 HOH HOH . L 4 HOH A 3 2003 2003 HOH HOH . L 4 HOH A 4 2004 2004 HOH HOH . L 4 HOH A 5 2005 2005 HOH HOH . L 4 HOH A 6 2006 2006 HOH HOH . L 4 HOH A 7 2007 2007 HOH HOH . L 4 HOH A 8 2008 2008 HOH HOH . L 4 HOH A 9 2009 2009 HOH HOH . L 4 HOH A 10 2010 2010 HOH HOH . L 4 HOH A 11 2011 2011 HOH HOH . L 4 HOH A 12 2012 2012 HOH HOH . L 4 HOH A 13 2013 2013 HOH HOH . L 4 HOH A 14 2014 2014 HOH HOH . L 4 HOH A 15 2015 2015 HOH HOH . L 4 HOH A 16 2016 2016 HOH HOH . L 4 HOH A 17 2017 2017 HOH HOH . L 4 HOH A 18 2018 2018 HOH HOH . L 4 HOH A 19 2019 2019 HOH HOH . L 4 HOH A 20 2020 2020 HOH HOH . L 4 HOH A 21 2021 2021 HOH HOH . L 4 HOH A 22 2022 2022 HOH HOH . L 4 HOH A 23 2023 2023 HOH HOH . L 4 HOH A 24 2024 2024 HOH HOH . L 4 HOH A 25 2025 2025 HOH HOH . L 4 HOH A 26 2026 2026 HOH HOH . L 4 HOH A 27 2027 2027 HOH HOH . L 4 HOH A 28 2028 2028 HOH HOH . L 4 HOH A 29 2029 2029 HOH HOH . L 4 HOH A 30 2030 2030 HOH HOH . L 4 HOH A 31 2031 2031 HOH HOH . L 4 HOH A 32 2032 2032 HOH HOH . L 4 HOH A 33 2033 2033 HOH HOH . L 4 HOH A 34 2034 2034 HOH HOH . L 4 HOH A 35 2035 2035 HOH HOH . L 4 HOH A 36 2036 2036 HOH HOH . L 4 HOH A 37 2037 2037 HOH HOH . L 4 HOH A 38 2038 2038 HOH HOH . L 4 HOH A 39 2039 2039 HOH HOH . L 4 HOH A 40 2040 2040 HOH HOH . L 4 HOH A 41 2041 2041 HOH HOH . L 4 HOH A 42 2042 2042 HOH HOH . L 4 HOH A 43 2043 2043 HOH HOH . L 4 HOH A 44 2044 2044 HOH HOH . L 4 HOH A 45 2045 2045 HOH HOH . L 4 HOH A 46 2046 2046 HOH HOH . L 4 HOH A 47 2047 2047 HOH HOH . L 4 HOH A 48 2048 2048 HOH HOH . L 4 HOH A 49 2049 2049 HOH HOH . L 4 HOH A 50 2050 2050 HOH HOH . L 4 HOH A 51 2051 2051 HOH HOH . L 4 HOH A 52 2052 2052 HOH HOH . L 4 HOH A 53 2053 2053 HOH HOH . L 4 HOH A 54 2054 2054 HOH HOH . L 4 HOH A 55 2055 2055 HOH HOH . L 4 HOH A 56 2056 2056 HOH HOH . L 4 HOH A 57 2057 2057 HOH HOH . L 4 HOH A 58 2058 2058 HOH HOH . L 4 HOH A 59 2059 2059 HOH HOH . L 4 HOH A 60 2060 2060 HOH HOH . L 4 HOH A 61 2061 2061 HOH HOH . L 4 HOH A 62 2062 2062 HOH HOH . L 4 HOH A 63 2063 2063 HOH HOH . M 4 HOH B 1 2001 2001 HOH HOH . M 4 HOH B 2 2002 2002 HOH HOH . M 4 HOH B 3 2003 2003 HOH HOH . M 4 HOH B 4 2004 2004 HOH HOH . M 4 HOH B 5 2005 2005 HOH HOH . M 4 HOH B 6 2006 2006 HOH HOH . M 4 HOH B 7 2007 2007 HOH HOH . M 4 HOH B 8 2008 2008 HOH HOH . M 4 HOH B 9 2009 2009 HOH HOH . M 4 HOH B 10 2010 2010 HOH HOH . M 4 HOH B 11 2011 2011 HOH HOH . M 4 HOH B 12 2012 2012 HOH HOH . M 4 HOH B 13 2013 2013 HOH HOH . M 4 HOH B 14 2014 2014 HOH HOH . M 4 HOH B 15 2015 2015 HOH HOH . M 4 HOH B 16 2016 2016 HOH HOH . M 4 HOH B 17 2017 2017 HOH HOH . M 4 HOH B 18 2018 2018 HOH HOH . M 4 HOH B 19 2019 2019 HOH HOH . M 4 HOH B 20 2020 2020 HOH HOH . M 4 HOH B 21 2021 2021 HOH HOH . M 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH C 1 2001 2001 HOH HOH . N 4 HOH C 2 2002 2002 HOH HOH . N 4 HOH C 3 2003 2003 HOH HOH . N 4 HOH C 4 2004 2004 HOH HOH . N 4 HOH C 5 2005 2005 HOH HOH . N 4 HOH C 6 2006 2006 HOH HOH . N 4 HOH C 7 2007 2007 HOH HOH . N 4 HOH C 8 2008 2008 HOH HOH . N 4 HOH C 9 2009 2009 HOH HOH . N 4 HOH C 10 2010 2010 HOH HOH . N 4 HOH C 11 2011 2011 HOH HOH . N 4 HOH C 12 2012 2012 HOH HOH . N 4 HOH C 13 2013 2013 HOH HOH . N 4 HOH C 14 2014 2014 HOH HOH . N 4 HOH C 15 2015 2015 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 54.531 _atom_site.Cartn_y -49.245 _atom_site.Cartn_z -41.577 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 212 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #