data_2WWI # _model_server_result.job_id h1u7zBrmdTh_1zDn2lMcvQ _model_server_result.datetime_utc '2024-10-26 20:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":211}' # _entry.id 2WWI # _exptl.entry_id 2WWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WWI _cell.length_a 110.337 _cell.length_b 110.337 _cell.length_c 119.109 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id ATM _chem_comp.mon_nstd_flag n _chem_comp.name "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 ATM doub 114 n n P OP2 ATM sing 115 n n P OP3 ATM sing 116 n n P O5' ATM sing 117 n n OP2 HOP2 ATM sing 118 n n OP3 HOP3 ATM sing 119 n n O5' C5' ATM sing 120 n n C5' C4' ATM sing 121 n n C5' H5' ATM sing 122 n n C5' "H5''" ATM sing 123 n n C4' O4' ATM sing 124 n n C4' C3' ATM sing 125 n n C4' H4' ATM sing 126 n n O4' C1' ATM sing 127 n n C3' N3' ATM sing 128 n n C3' C2' ATM sing 129 n n C3' H3' ATM sing 130 n n N3' N4' ATM doub 131 n n N4' N5' ATM doub 132 n n C2' C1' ATM sing 133 n n C2' H2' ATM sing 134 n n C2' "H2''" ATM sing 135 n n C1' N1 ATM sing 136 n n C1' H1' ATM sing 137 n n N1 C2 ATM sing 138 n n N1 C6 ATM sing 139 n n C2 O2 ATM doub 140 n n C2 N3 ATM sing 141 n n N3 C4 ATM sing 142 n n N3 HN3 ATM sing 143 n n C4 O4 ATM doub 144 n n C4 C5 ATM sing 145 n n C5 C5A ATM sing 146 n n C5 C6 ATM doub 147 n n C5A H51 ATM sing 148 n n C5A H52 ATM sing 149 n n C5A H53 ATM sing 150 n n C6 H6 ATM sing 151 n n # _atom_sites.entry_id 2WWI _atom_sites.fract_transf_matrix[1][1] 0.009063 _atom_sites.fract_transf_matrix[1][2] 0.005233 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATM A 1 211 211 ATM ATM . E 3 ADP A 1 212 212 ADP ADP . F 2 ATM B 1 211 211 ATM ATM . G 3 ADP B 1 212 212 ADP ADP . H 2 ATM C 1 211 211 ATM ATM . I 3 ADP C 1 212 212 ADP ADP . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . L 4 HOH C 1 2001 2001 HOH HOH . L 4 HOH C 2 2002 2002 HOH HOH . L 4 HOH C 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P ATM . . . H 2 55.287 -48.272 -37.161 1 40.03 ? P ATM 211 C 1 HETATM 2 O OP1 ATM . . . H 2 55.2 -49.728 -36.822 1 40.14 ? OP1 ATM 211 C 1 HETATM 3 O OP2 ATM . . . H 2 54.078 -47.797 -38.145 1 40.1 ? OP2 ATM 211 C 1 HETATM 4 O OP3 ATM . . . H 2 56.625 -47.823 -37.931 1 37.75 ? OP3 ATM 211 C 1 HETATM 5 O O5' ATM . . . H 2 55.202 -47.377 -35.846 1 39.83 ? O5' ATM 211 C 1 HETATM 6 C C5' ATM . . . H 2 53.931 -46.961 -35.398 1 38.73 ? C5' ATM 211 C 1 HETATM 7 C C4' ATM . . . H 2 53.586 -47.539 -34.066 1 37.7 ? C4' ATM 211 C 1 HETATM 8 O O4' ATM . . . H 2 52.828 -46.5 -33.431 1 38.03 ? O4' ATM 211 C 1 HETATM 9 C C3' ATM . . . H 2 52.642 -48.701 -34.332 1 37.63 ? C3' ATM 211 C 1 HETATM 10 N N3' ATM . . . H 2 53.014 -49.8 -33.445 1 38.75 ? N3' ATM 211 C 1 HETATM 11 N N4' ATM . . . H 2 54.323 -49.647 -32.647 0 30 ? N4' ATM 211 C 1 HETATM 12 N N5' ATM . . . H 2 55.383 -49.614 -32.248 0 30 ? N5' ATM 211 C 1 HETATM 13 C C2' ATM . . . H 2 51.256 -48.206 -33.937 1 36.73 ? C2' ATM 211 C 1 HETATM 14 C C1' ATM . . . H 2 51.532 -47.023 -33.059 1 37.4 ? C1' ATM 211 C 1 HETATM 15 N N1 ATM . . . H 2 50.554 -45.983 -33.403 1 37.48 ? N1 ATM 211 C 1 HETATM 16 C C2 ATM . . . H 2 49.609 -45.593 -32.455 1 39.22 ? C2 ATM 211 C 1 HETATM 17 O O2 ATM . . . H 2 49.619 -46.137 -31.349 1 41.52 ? O2 ATM 211 C 1 HETATM 18 N N3 ATM . . . H 2 48.702 -44.63 -32.724 1 38.16 ? N3 ATM 211 C 1 HETATM 19 C C4 ATM . . . H 2 48.681 -44.037 -33.92 1 36.99 ? C4 ATM 211 C 1 HETATM 20 O O4 ATM . . . H 2 47.73 -43.094 -34.132 1 36.55 ? O4 ATM 211 C 1 HETATM 21 C C5 ATM . . . H 2 49.611 -44.398 -34.906 1 36.58 ? C5 ATM 211 C 1 HETATM 22 C C5A ATM . . . H 2 49.634 -43.745 -36.285 1 36.88 ? C5A ATM 211 C 1 HETATM 23 C C6 ATM . . . H 2 50.556 -45.373 -34.649 1 36.44 ? C6 ATM 211 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #