data_2WWI
#
_model_server_result.job_id            o-flwZx63ap-AivZJmbpoQ 
_model_server_result.datetime_utc      '2024-10-26 20:36:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wwi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":212}' 
#
_entry.id    2WWI 
#
_exptl.entry_id    2WWI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2WWI 
_cell.length_a            110.337 
_cell.length_b            110.337 
_cell.length_c            119.109 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WWI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1,2 
B,C,F,G,H,I,K,L 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2WWI 
_atom_sites.fract_transf_matrix[1][1]    0.009063 
_atom_sites.fract_transf_matrix[1][2]    0.005233 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ATM A 1 211 211 ATM ATM . 
E 3 ADP A 1 212 212 ADP ADP . 
F 2 ATM B 1 211 211 ATM ATM . 
G 3 ADP B 1 212 212 ADP ADP . 
H 2 ATM C 1 211 211 ATM ATM . 
I 3 ADP C 1 212 212 ADP ADP . 
J 4 HOH A 1 2001 2001 HOH HOH . 
J 4 HOH A 2 2002 2002 HOH HOH . 
J 4 HOH A 3 2003 2003 HOH HOH . 
J 4 HOH A 4 2004 2004 HOH HOH . 
J 4 HOH A 5 2005 2005 HOH HOH . 
J 4 HOH A 6 2006 2006 HOH HOH . 
J 4 HOH A 7 2007 2007 HOH HOH . 
J 4 HOH A 8 2008 2008 HOH HOH . 
J 4 HOH A 9 2009 2009 HOH HOH . 
J 4 HOH A 10 2010 2010 HOH HOH . 
J 4 HOH A 11 2011 2011 HOH HOH . 
J 4 HOH A 12 2012 2012 HOH HOH . 
J 4 HOH A 13 2013 2013 HOH HOH . 
J 4 HOH A 14 2014 2014 HOH HOH . 
K 4 HOH B 1 2001 2001 HOH HOH . 
K 4 HOH B 2 2002 2002 HOH HOH . 
K 4 HOH B 3 2003 2003 HOH HOH . 
K 4 HOH B 4 2004 2004 HOH HOH . 
K 4 HOH B 5 2005 2005 HOH HOH . 
K 4 HOH B 6 2006 2006 HOH HOH . 
K 4 HOH B 7 2007 2007 HOH HOH . 
L 4 HOH C 1 2001 2001 HOH HOH . 
L 4 HOH C 2 2002 2002 HOH HOH . 
L 4 HOH C 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 3 46.763 -12.01 -16.897 1 50.93 ? PB ADP 212 B 1 
HETATM 2 O O1B ADP . . . G 3 47.736 -12.891 -16.159 1 51.89 ? O1B ADP 212 B 1 
HETATM 3 O O2B ADP . . . G 3 45.315 -12.331 -16.659 1 50.11 ? O2B ADP 212 B 1 
HETATM 4 O O3B ADP . . . G 3 47.146 -11.804 -18.344 1 51.22 ? O3B ADP 212 B 1 
HETATM 5 P PA ADP . . . G 3 47.955 -9.999 -15.172 1 53.69 ? PA ADP 212 B 1 
HETATM 6 O O1A ADP . . . G 3 47.516 -10.327 -13.758 1 52.26 ? O1A ADP 212 B 1 
HETATM 7 O O2A ADP . . . G 3 49.34 -10.394 -15.661 1 52.58 ? O2A ADP 212 B 1 
HETATM 8 O O3A ADP . . . G 3 46.842 -10.549 -16.216 1 52.92 ? O3A ADP 212 B 1 
HETATM 9 O O5' ADP . . . G 3 47.701 -8.422 -15.407 1 52.92 ? O5' ADP 212 B 1 
HETATM 10 C C5' ADP . . . G 3 48.239 -7.717 -16.526 1 53.37 ? C5' ADP 212 B 1 
HETATM 11 C C4' ADP . . . G 3 48.762 -6.355 -16.058 1 54.6 ? C4' ADP 212 B 1 
HETATM 12 O O4' ADP . . . G 3 47.691 -5.567 -15.518 1 55.38 ? O4' ADP 212 B 1 
HETATM 13 C C3' ADP . . . G 3 49.796 -6.48 -14.945 1 54.98 ? C3' ADP 212 B 1 
HETATM 14 O O3' ADP . . . G 3 50.806 -5.479 -15.083 1 55.28 ? O3' ADP 212 B 1 
HETATM 15 C C2' ADP . . . G 3 49.025 -6.176 -13.689 1 54.76 ? C2' ADP 212 B 1 
HETATM 16 O O2' ADP . . . G 3 49.904 -5.624 -12.722 1 54.21 ? O2' ADP 212 B 1 
HETATM 17 C C1' ADP . . . G 3 47.949 -5.207 -14.161 1 55.17 ? C1' ADP 212 B 1 
HETATM 18 N N9 ADP . . . G 3 46.712 -5.426 -13.393 1 56.36 ? N9 ADP 212 B 1 
HETATM 19 C C8 ADP . . . G 3 46.376 -6.574 -12.775 1 57.36 ? C8 ADP 212 B 1 
HETATM 20 N N7 ADP . . . G 3 45.181 -6.469 -12.135 1 57.97 ? N7 ADP 212 B 1 
HETATM 21 C C5 ADP . . . G 3 44.718 -5.222 -12.346 1 58.38 ? C5 ADP 212 B 1 
HETATM 22 C C6 ADP . . . G 3 43.504 -4.453 -11.948 1 58.12 ? C6 ADP 212 B 1 
HETATM 23 N N6 ADP . . . G 3 42.519 -5.009 -11.191 1 57.57 ? N6 ADP 212 B 1 
HETATM 24 N N1 ADP . . . G 3 43.425 -3.171 -12.388 1 58.17 ? N1 ADP 212 B 1 
HETATM 25 C C2 ADP . . . G 3 44.391 -2.598 -13.15 1 57.73 ? C2 ADP 212 B 1 
HETATM 26 N N3 ADP . . . G 3 45.518 -3.233 -13.539 1 58.26 ? N3 ADP 212 B 1 
HETATM 27 C C4 ADP . . . G 3 45.739 -4.532 -13.183 1 57.94 ? C4 ADP 212 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#