data_2WWI # _model_server_result.job_id VrOrTBoTBBHao_r9Gt8vbA _model_server_result.datetime_utc '2024-10-26 20:30:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":212}' # _entry.id 2WWI # _exptl.entry_id 2WWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WWI _cell.length_a 110.337 _cell.length_b 110.337 _cell.length_c 119.109 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2WWI _atom_sites.fract_transf_matrix[1][1] 0.009063 _atom_sites.fract_transf_matrix[1][2] 0.005233 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATM A 1 211 211 ATM ATM . E 3 ADP A 1 212 212 ADP ADP . F 2 ATM B 1 211 211 ATM ATM . G 3 ADP B 1 212 212 ADP ADP . H 2 ATM C 1 211 211 ATM ATM . I 3 ADP C 1 212 212 ADP ADP . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . L 4 HOH C 1 2001 2001 HOH HOH . L 4 HOH C 2 2002 2002 HOH HOH . L 4 HOH C 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 3 55.324 -53.272 -41.204 1 37.84 ? PB ADP 212 C 1 HETATM 2 O O1B ADP . . . I 3 55.756 -52.123 -42.086 1 36.2 ? O1B ADP 212 C 1 HETATM 3 O O2B ADP . . . I 3 53.862 -53.594 -41.414 1 36.41 ? O2B ADP 212 C 1 HETATM 4 O O3B ADP . . . I 3 55.776 -53.224 -39.752 1 36.58 ? O3B ADP 212 C 1 HETATM 5 P PA ADP . . . I 3 57.197 -54.478 -42.885 1 38.97 ? PA ADP 212 C 1 HETATM 6 O O1A ADP . . . I 3 56.447 -54.283 -44.188 1 38.08 ? O1A ADP 212 C 1 HETATM 7 O O2A ADP . . . I 3 58.313 -53.512 -42.557 1 38.02 ? O2A ADP 212 C 1 HETATM 8 O O3A ADP . . . I 3 56.15 -54.56 -41.683 1 37.62 ? O3A ADP 212 C 1 HETATM 9 O O5' ADP . . . I 3 57.688 -56.01 -42.781 1 41.09 ? O5' ADP 212 C 1 HETATM 10 C C5' ADP . . . I 3 58.301 -56.58 -41.613 1 42.75 ? C5' ADP 212 C 1 HETATM 11 C C4' ADP . . . I 3 59.35 -57.65 -41.984 1 43.04 ? C4' ADP 212 C 1 HETATM 12 O O4' ADP . . . I 3 58.73 -58.824 -42.521 1 43.57 ? O4' ADP 212 C 1 HETATM 13 C C3' ADP . . . I 3 60.342 -57.188 -43.04 1 42.93 ? C3' ADP 212 C 1 HETATM 14 O O3' ADP . . . I 3 61.622 -57.729 -42.699 1 42.89 ? O3' ADP 212 C 1 HETATM 15 C C2' ADP . . . I 3 59.858 -57.796 -44.339 1 42.98 ? C2' ADP 212 C 1 HETATM 16 O O2' ADP . . . I 3 61.001 -58.153 -45.112 1 42.13 ? O2' ADP 212 C 1 HETATM 17 C C1' ADP . . . I 3 59.079 -59.032 -43.895 1 44.62 ? C1' ADP 212 C 1 HETATM 18 N N9 ADP . . . I 3 57.781 -59.314 -44.567 1 46.18 ? N9 ADP 212 C 1 HETATM 19 C C8 ADP . . . I 3 56.843 -58.42 -44.955 1 47.73 ? C8 ADP 212 C 1 HETATM 20 N N7 ADP . . . I 3 55.751 -59.022 -45.512 1 47.8 ? N7 ADP 212 C 1 HETATM 21 C C5 ADP . . . I 3 55.982 -60.348 -45.457 1 47.61 ? C5 ADP 212 C 1 HETATM 22 C C6 ADP . . . I 3 55.246 -61.564 -45.864 1 47.17 ? C6 ADP 212 C 1 HETATM 23 N N6 ADP . . . I 3 54.029 -61.449 -46.442 1 48.04 ? N6 ADP 212 C 1 HETATM 24 N N1 ADP . . . I 3 55.833 -62.766 -45.645 1 46.37 ? N1 ADP 212 C 1 HETATM 25 C C2 ADP . . . I 3 57.051 -62.871 -45.07 1 45.73 ? C2 ADP 212 C 1 HETATM 26 N N3 ADP . . . I 3 57.784 -61.814 -44.677 1 45.59 ? N3 ADP 212 C 1 HETATM 27 C C4 ADP . . . I 3 57.315 -60.543 -44.838 1 46.91 ? C4 ADP 212 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #