data_2WXI # _model_server_result.job_id pm1-wbVG1GKHLbMsaTh-0g _model_server_result.datetime_utc '2025-01-03 13:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1500}' # _entry.id 2WXI # _exptl.entry_id 2WXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[4-amino-3-(3-hydroxyprop-1-yn-1-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]methyl}-5-methyl-3-(2-methylphenyl)quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.26 _cell.angle_gamma 90 _cell.entry_id 2WXI _cell.length_a 141.96 _cell.length_b 64.67 _cell.length_c 116.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H21 N7 O2' _chem_comp.formula_weight 451.48 _chem_comp.id S30 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[4-amino-3-(3-hydroxyprop-1-yn-1-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]methyl}-5-methyl-3-(2-methylphenyl)quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAL S30 sing 290 n n CAL CAM S30 sing 291 n y CAL CAK S30 doub 292 n y CAM CAE S30 doub 293 n y CAE CAD S30 sing 294 n y CAD CAC S30 doub 295 n y CAC CAK S30 sing 296 n y CAK NAJ S30 sing 297 n n NAJ CAI S30 sing 298 n n NAJ CAR S30 sing 299 n n CAI OAB S30 doub 300 n n CAI CAH S30 sing 301 n n CAH CAG S30 sing 302 n y CAH CAP S30 doub 303 n y CAG CAA S30 sing 304 n n CAG CAF S30 doub 305 n y CAF CAN S30 sing 306 n y CAN CAO S30 doub 307 n y CAO CAP S30 sing 308 n y CAP NAQ S30 sing 309 n n NAQ CAR S30 doub 310 n n CAR CAS S30 sing 311 n n CAS NAV S30 sing 312 n n NAV NAU S30 sing 313 n y NAV C6 S30 sing 314 n y NAU CAZ S30 doub 315 n y C6 N1 S30 sing 316 n y C6 C5 S30 doub 317 n y N1 C2 S30 doub 318 n y C2 N3 S30 sing 319 n y N3 C4 S30 doub 320 n y C4 NBE S30 sing 321 n n C4 C5 S30 sing 322 n y C5 CAZ S30 sing 323 n y CAZ CBD S30 sing 324 n n CBD CBF S30 trip 325 n n CBF CBG S30 sing 326 n n CBG OBH S30 sing 327 n n CAT HAT1 S30 sing 328 n n CAT HAT2 S30 sing 329 n n CAT HAT3 S30 sing 330 n n CAM HAM S30 sing 331 n n CAE HAE S30 sing 332 n n CAD HAD S30 sing 333 n n CAC HAC S30 sing 334 n n CAA HAA1 S30 sing 335 n n CAA HAA2 S30 sing 336 n n CAA HAA3 S30 sing 337 n n CAF HAF S30 sing 338 n n CAN HAN S30 sing 339 n n CAO HAO S30 sing 340 n n CAS HAS1 S30 sing 341 n n CAS HAS2 S30 sing 342 n n C2 H2 S30 sing 343 n n NBE HBE1 S30 sing 344 n n NBE HBE2 S30 sing 345 n n CBG HBG1 S30 sing 346 n n CBG HBG2 S30 sing 347 n n OBH HBH S30 sing 348 n n # _atom_sites.entry_id 2WXI _atom_sites.fract_transf_matrix[1][1] 0.007044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S30 A 1 1500 1500 S30 S30 . C 3 GOL A 1 2028 2028 GOL GOL . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAT S30 . . . B 2 -3.069 -0.384 23.699 1 22.5 ? CAT S30 1500 A 1 HETATM 2 C CAL S30 . . . B 2 -3.943 -1.595 23.725 1 24.46 ? CAL S30 1500 A 1 HETATM 3 C CAM S30 . . . B 2 -3.536 -2.645 24.52 1 22.38 ? CAM S30 1500 A 1 HETATM 4 C CAE S30 . . . B 2 -4.377 -3.762 24.522 1 27.54 ? CAE S30 1500 A 1 HETATM 5 C CAD S30 . . . B 2 -5.565 -3.872 23.764 1 27.01 ? CAD S30 1500 A 1 HETATM 6 C CAC S30 . . . B 2 -5.938 -2.818 22.942 1 27.21 ? CAC S30 1500 A 1 HETATM 7 C CAK S30 . . . B 2 -5.124 -1.67 22.959 1 27.16 ? CAK S30 1500 A 1 HETATM 8 N NAJ S30 . . . B 2 -5.567 -0.642 22.123 1 28.05 ? NAJ S30 1500 A 1 HETATM 9 C CAI S30 . . . B 2 -4.988 -0.526 20.857 1 27.74 ? CAI S30 1500 A 1 HETATM 10 O OAB S30 . . . B 2 -4.072 -1.332 20.626 1 29.03 ? OAB S30 1500 A 1 HETATM 11 C CAH S30 . . . B 2 -5.439 0.473 19.979 1 25.36 ? CAH S30 1500 A 1 HETATM 12 C CAG S30 . . . B 2 -4.892 0.7 18.68 1 28.01 ? CAG S30 1500 A 1 HETATM 13 C CAA S30 . . . B 2 -3.723 -0.138 18.063 1 22.51 ? CAA S30 1500 A 1 HETATM 14 C CAF S30 . . . B 2 -5.408 1.74 17.87 1 26.9 ? CAF S30 1500 A 1 HETATM 15 C CAN S30 . . . B 2 -6.46 2.535 18.335 1 27 ? CAN S30 1500 A 1 HETATM 16 C CAO S30 . . . B 2 -6.975 2.324 19.614 1 26.93 ? CAO S30 1500 A 1 HETATM 17 C CAP S30 . . . B 2 -6.475 1.3 20.44 1 26.08 ? CAP S30 1500 A 1 HETATM 18 N NAQ S30 . . . B 2 -7.041 1.146 21.665 1 25.26 ? NAQ S30 1500 A 1 HETATM 19 C CAR S30 . . . B 2 -6.616 0.186 22.52 1 26.59 ? CAR S30 1500 A 1 HETATM 20 C CAS S30 . . . B 2 -7.216 -0.009 23.927 1 24.62 ? CAS S30 1500 A 1 HETATM 21 N NAV S30 . . . B 2 -7.533 1.344 24.457 1 24.03 ? NAV S30 1500 A 1 HETATM 22 N NAU S30 . . . B 2 -8.692 1.735 24.36 1 24.19 ? NAU S30 1500 A 1 HETATM 23 C C6 S30 . . . B 2 -6.74 2.271 25.019 1 20.66 ? C6 S30 1500 A 1 HETATM 24 N N1 S30 . . . B 2 -5.45 2.351 25.337 1 22.53 ? N1 S30 1500 A 1 HETATM 25 C C2 S30 . . . B 2 -4.883 3.407 25.927 1 22.52 ? C2 S30 1500 A 1 HETATM 26 N N3 S30 . . . B 2 -5.607 4.476 26.218 1 24.5 ? N3 S30 1500 A 1 HETATM 27 C C4 S30 . . . B 2 -6.923 4.48 25.918 1 23.17 ? C4 S30 1500 A 1 HETATM 28 N NBE S30 . . . B 2 -7.591 5.573 26.248 1 23.66 ? NBE S30 1500 A 1 HETATM 29 C C5 S30 . . . B 2 -7.528 3.356 25.306 1 21.78 ? C5 S30 1500 A 1 HETATM 30 C CAZ S30 . . . B 2 -8.79 2.947 24.849 1 23.03 ? CAZ S30 1500 A 1 HETATM 31 C CBD S30 . . . B 2 -10.023 3.64 24.851 1 23.34 ? CBD S30 1500 A 1 HETATM 32 C CBF S30 . . . B 2 -11.059 4.16 24.843 1 26.59 ? CBF S30 1500 A 1 HETATM 33 C CBG S30 . . . B 2 -12.361 4.813 24.84 1 31.06 ? CBG S30 1500 A 1 HETATM 34 O OBH S30 . . . B 2 -13.401 3.828 25.016 1 31.48 ? OBH S30 1500 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 970 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 34 #