data_2WXP # _model_server_result.job_id 1QOjsR_BsOU-3VN9Od5q1w _model_server_result.datetime_utc '2024-11-22 05:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1500}' # _entry.id 2WXP # _exptl.entry_id 2WXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.636 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-yl-thieno[3,2-d]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.62 _cell.angle_gamma 90 _cell.entry_id 2WXP _cell.length_a 142.72 _cell.length_b 64.04 _cell.length_c 117.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N7 O3 S2' _chem_comp.formula_weight 513.636 _chem_comp.id GD9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-yl-thieno[3,2-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C15 GD9 sing 83 n n O3 C16 GD9 sing 84 n n C4 N2 GD9 doub 85 n y C4 N3 GD9 sing 86 n n C4 C1 GD9 sing 87 n y C5 C6 GD9 doub 88 n y C5 C7 GD9 sing 89 n n C5 S1 GD9 sing 90 n y C6 C2 GD9 sing 91 n y N1 C2 GD9 sing 92 n y N1 C3 GD9 doub 93 n y C7 N4 GD9 sing 94 n n C8 C3 GD9 sing 95 n y C8 C18 GD9 doub 96 n y C8 C22 GD9 sing 97 n y N2 C3 GD9 sing 98 n y C9 C10 GD9 sing 99 n n C9 N4 GD9 sing 100 n n C10 N5 GD9 sing 101 n n C11 C12 GD9 sing 102 n n C11 N5 GD9 sing 103 n n C12 N4 GD9 sing 104 n n N3 C14 GD9 sing 105 n n N3 C17 GD9 sing 106 n n C13 S2 GD9 sing 107 n n C14 C15 GD9 sing 108 n n O2 S2 GD9 doub 109 n n S2 O1 GD9 doub 110 n n S2 N5 GD9 sing 111 n n S1 C1 GD9 sing 112 n y C2 C1 GD9 doub 113 n y C18 C19 GD9 sing 114 n y C19 C20 GD9 doub 115 n y C20 C21 GD9 sing 116 n y C21 N6 GD9 sing 117 n y C21 C22 GD9 doub 118 n y N6 N7 GD9 sing 119 n y C22 C23 GD9 sing 120 n y C23 N7 GD9 doub 121 n y C16 C17 GD9 sing 122 n n C6 H6 GD9 sing 123 n n C7 H7 GD9 sing 124 n n C7 H7A GD9 sing 125 n n C9 H9 GD9 sing 126 n n C9 H9A GD9 sing 127 n n C10 H10 GD9 sing 128 n n C10 H10A GD9 sing 129 n n C11 H11 GD9 sing 130 n n C11 H11A GD9 sing 131 n n C12 H12 GD9 sing 132 n n C12 H12A GD9 sing 133 n n C13 H13 GD9 sing 134 n n C13 H13A GD9 sing 135 n n C13 H13B GD9 sing 136 n n C14 H14 GD9 sing 137 n n C14 H14A GD9 sing 138 n n C15 H15 GD9 sing 139 n n C15 H15A GD9 sing 140 n n C18 H18 GD9 sing 141 n n C19 H19 GD9 sing 142 n n C20 H20 GD9 sing 143 n n N6 HN6 GD9 sing 144 n n C23 H23 GD9 sing 145 n n C16 H16 GD9 sing 146 n n C16 H16A GD9 sing 147 n n C17 H17 GD9 sing 148 n n C17 H17A GD9 sing 149 n n # _atom_sites.entry_id 2WXP _atom_sites.fract_transf_matrix[1][1] 0.007007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001698 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GD9 A 1 1500 1500 GD9 GD9 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GD9 . . . B 2 -5.997 2.505 27.656 1 38.61 ? O3 GD9 1500 A 1 HETATM 2 C C4 GD9 . . . B 2 -7.98 0.579 24.683 1 36 ? C4 GD9 1500 A 1 HETATM 3 C C5 GD9 . . . B 2 -6.716 -2.964 23.827 1 44.4 ? C5 GD9 1500 A 1 HETATM 4 C C6 GD9 . . . B 2 -7.935 -2.757 23.336 1 39.92 ? C6 GD9 1500 A 1 HETATM 5 N N1 GD9 . . . B 2 -9.631 -1.048 23.229 1 39.8 ? N1 GD9 1500 A 1 HETATM 6 C C7 GD9 . . . B 2 -5.851 -4.211 23.728 1 50.43 ? C7 GD9 1500 A 1 HETATM 7 C C8 GD9 . . . B 2 -11.232 0.657 23.219 1 40.07 ? C8 GD9 1500 A 1 HETATM 8 N N2 GD9 . . . B 2 -9.16 1.003 24.286 1 36.04 ? N2 GD9 1500 A 1 HETATM 9 C C9 GD9 . . . B 2 -5.763 -5.957 22.15 1 62.4 ? C9 GD9 1500 A 1 HETATM 10 C C10 GD9 . . . B 2 -5.846 -6.271 20.641 1 65.84 ? C10 GD9 1500 A 1 HETATM 11 C C11 GD9 . . . B 2 -3.958 -4.673 20.511 1 64.82 ? C11 GD9 1500 A 1 HETATM 12 C C12 GD9 . . . B 2 -4.279 -4.014 21.876 1 60.38 ? C12 GD9 1500 A 1 HETATM 13 N N3 GD9 . . . B 2 -7.184 1.471 25.399 1 35.34 ? N3 GD9 1500 A 1 HETATM 14 C C13 GD9 . . . B 2 -4.179 -7.391 18.258 1 70.32 ? C13 GD9 1500 A 1 HETATM 15 C C14 GD9 . . . B 2 -5.746 1.246 25.519 1 34.69 ? C14 GD9 1500 A 1 HETATM 16 C C15 GD9 . . . B 2 -5.195 1.573 26.919 1 37.58 ? C15 GD9 1500 A 1 HETATM 17 N N4 GD9 . . . B 2 -5.578 -4.512 22.342 1 57.41 ? N4 GD9 1500 A 1 HETATM 18 O O2 GD9 . . . B 2 -6.187 -5.74 17.514 1 71.48 ? O2 GD9 1500 A 1 HETATM 19 S S2 GD9 . . . B 2 -4.884 -5.74 18.252 1 72.04 ? S2 GD9 1500 A 1 HETATM 20 O O1 GD9 . . . B 2 -3.92 -4.8 17.566 1 68.55 ? O1 GD9 1500 A 1 HETATM 21 N N5 GD9 . . . B 2 -5.173 -5.213 19.846 1 67.72 ? N5 GD9 1500 A 1 HETATM 22 S S1 GD9 . . . B 2 -6.162 -1.621 24.614 1 39.01 ? S1 GD9 1500 A 1 HETATM 23 C C2 GD9 . . . B 2 -8.434 -1.537 23.572 1 40.8 ? C2 GD9 1500 A 1 HETATM 24 C C1 GD9 . . . B 2 -7.579 -0.711 24.33 1 39.8 ? C1 GD9 1500 A 1 HETATM 25 C C3 GD9 . . . B 2 -9.974 0.21 23.564 1 39.66 ? C3 GD9 1500 A 1 HETATM 26 C C18 GD9 . . . B 2 -11.875 0.098 22.116 1 41.94 ? C18 GD9 1500 A 1 HETATM 27 C C19 GD9 . . . B 2 -13.178 0.524 21.781 1 40.96 ? C19 GD9 1500 A 1 HETATM 28 C C20 GD9 . . . B 2 -13.821 1.483 22.574 1 40.94 ? C20 GD9 1500 A 1 HETATM 29 C C21 GD9 . . . B 2 -13.182 2.013 23.701 1 40.96 ? C21 GD9 1500 A 1 HETATM 30 N N6 GD9 . . . B 2 -13.551 2.906 24.631 1 41.64 ? N6 GD9 1500 A 1 HETATM 31 C C22 GD9 . . . B 2 -11.905 1.597 24.017 1 40.44 ? C22 GD9 1500 A 1 HETATM 32 C C23 GD9 . . . B 2 -11.61 2.28 25.12 1 42.45 ? C23 GD9 1500 A 1 HETATM 33 N N7 GD9 . . . B 2 -12.647 3.059 25.453 1 41.39 ? N7 GD9 1500 A 1 HETATM 34 C C16 GD9 . . . B 2 -6.856 3.355 26.921 1 36.76 ? C16 GD9 1500 A 1 HETATM 35 C C17 GD9 . . . B 2 -7.784 2.704 25.946 1 34.91 ? C17 GD9 1500 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #