data_2WXY
#
_model_server_result.job_id            pTKc8tjPX5Sv8IUGVtDAqA 
_model_server_result.datetime_utc      '2024-12-26 21:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2wxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1453}' 
#
_entry.id    2WXY 
#
_exptl.entry_id    2WXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2WXY 
_cell.length_a            64.794 
_cell.length_b            64.794 
_cell.length_c            463.197 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2WXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -77.1995 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 12 C TYR 12 1_555 I NA NA . C NA 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc2 A OE1 GLU 31 C GLU 31 1_555 E NA NA . C NA 1454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A OE2 GLU 65 C GLU 65 1_555 B NA NA . C NA 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? 
metalc ? metalc4 D O1 EDO . C EDO 1453 1_555 I NA NA . C NA 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2WXY 
_atom_sites.fract_transf_matrix[1][1]    0.015434 
_atom_sites.fract_transf_matrix[1][2]    0.008911 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA C 1 1451 1451 NA NA . 
C 3 EDO C 1 1452 1452 EDO EDO . 
D 3 EDO C 1 1453 1453 EDO EDO . 
E 2 NA C 1 1454 1454 NA NA . 
F 3 EDO C 1 1455 1455 EDO EDO . 
G 3 EDO C 1 1456 1456 EDO EDO . 
H 3 EDO C 1 1457 1457 EDO EDO . 
I 2 NA C 1 1458 1458 NA NA . 
J 2 NA C 1 1459 1459 NA NA . 
K 4 HOH C 1 2001 2001 HOH HOH . 
K 4 HOH C 2 2002 2002 HOH HOH . 
K 4 HOH C 3 2003 2003 HOH HOH . 
K 4 HOH C 4 2004 2004 HOH HOH . 
K 4 HOH C 5 2005 2005 HOH HOH . 
K 4 HOH C 6 2006 2006 HOH HOH . 
K 4 HOH C 7 2007 2007 HOH HOH . 
K 4 HOH C 8 2008 2008 HOH HOH . 
K 4 HOH C 9 2009 2009 HOH HOH . 
K 4 HOH C 10 2010 2010 HOH HOH . 
K 4 HOH C 11 2011 2011 HOH HOH . 
K 4 HOH C 12 2012 2012 HOH HOH . 
K 4 HOH C 13 2013 2013 HOH HOH . 
K 4 HOH C 14 2014 2014 HOH HOH . 
K 4 HOH C 15 2015 2015 HOH HOH . 
K 4 HOH C 16 2016 2016 HOH HOH . 
K 4 HOH C 17 2017 2017 HOH HOH . 
K 4 HOH C 18 2018 2018 HOH HOH . 
K 4 HOH C 19 2019 2019 HOH HOH . 
K 4 HOH C 20 2020 2020 HOH HOH . 
K 4 HOH C 21 2021 2021 HOH HOH . 
K 4 HOH C 22 2022 2022 HOH HOH . 
K 4 HOH C 23 2023 2023 HOH HOH . 
K 4 HOH C 24 2024 2024 HOH HOH . 
K 4 HOH C 25 2025 2025 HOH HOH . 
K 4 HOH C 26 2026 2026 HOH HOH . 
K 4 HOH C 27 2027 2027 HOH HOH . 
K 4 HOH C 28 2028 2028 HOH HOH . 
K 4 HOH C 29 2029 2029 HOH HOH . 
K 4 HOH C 30 2030 2030 HOH HOH . 
K 4 HOH C 31 2031 2031 HOH HOH . 
K 4 HOH C 32 2032 2032 HOH HOH . 
K 4 HOH C 33 2033 2033 HOH HOH . 
K 4 HOH C 34 2034 2034 HOH HOH . 
K 4 HOH C 35 2035 2035 HOH HOH . 
K 4 HOH C 36 2036 2036 HOH HOH . 
K 4 HOH C 37 2037 2037 HOH HOH . 
K 4 HOH C 38 2038 2038 HOH HOH . 
K 4 HOH C 39 2039 2039 HOH HOH . 
K 4 HOH C 40 2040 2040 HOH HOH . 
K 4 HOH C 41 2041 2041 HOH HOH . 
K 4 HOH C 42 2042 2042 HOH HOH . 
K 4 HOH C 43 2043 2043 HOH HOH . 
K 4 HOH C 44 2044 2044 HOH HOH . 
K 4 HOH C 45 2045 2045 HOH HOH . 
K 4 HOH C 46 2046 2046 HOH HOH . 
K 4 HOH C 47 2047 2047 HOH HOH . 
K 4 HOH C 48 2048 2048 HOH HOH . 
K 4 HOH C 49 2049 2049 HOH HOH . 
K 4 HOH C 50 2050 2050 HOH HOH . 
K 4 HOH C 51 2051 2051 HOH HOH . 
K 4 HOH C 52 2052 2052 HOH HOH . 
K 4 HOH C 53 2053 2053 HOH HOH . 
K 4 HOH C 54 2054 2054 HOH HOH . 
K 4 HOH C 55 2055 2055 HOH HOH . 
K 4 HOH C 56 2056 2056 HOH HOH . 
K 4 HOH C 57 2057 2057 HOH HOH . 
K 4 HOH C 58 2058 2058 HOH HOH . 
K 4 HOH C 59 2059 2059 HOH HOH . 
K 4 HOH C 60 2060 2060 HOH HOH . 
K 4 HOH C 61 2061 2061 HOH HOH . 
K 4 HOH C 62 2062 2062 HOH HOH . 
K 4 HOH C 63 2063 2063 HOH HOH . 
K 4 HOH C 64 2064 2064 HOH HOH . 
K 4 HOH C 65 2065 2065 HOH HOH . 
K 4 HOH C 66 2066 2066 HOH HOH . 
K 4 HOH C 67 2067 2067 HOH HOH . 
K 4 HOH C 68 2068 2068 HOH HOH . 
K 4 HOH C 69 2069 2069 HOH HOH . 
K 4 HOH C 70 2070 2070 HOH HOH . 
K 4 HOH C 71 2071 2071 HOH HOH . 
K 4 HOH C 72 2072 2072 HOH HOH . 
K 4 HOH C 73 2073 2073 HOH HOH . 
K 4 HOH C 74 2074 2074 HOH HOH . 
K 4 HOH C 75 2075 2075 HOH HOH . 
K 4 HOH C 76 2076 2076 HOH HOH . 
K 4 HOH C 77 2077 2077 HOH HOH . 
K 4 HOH C 78 2078 2078 HOH HOH . 
K 4 HOH C 79 2079 2079 HOH HOH . 
K 4 HOH C 80 2080 2080 HOH HOH . 
K 4 HOH C 81 2081 2081 HOH HOH . 
K 4 HOH C 82 2082 2082 HOH HOH . 
K 4 HOH C 83 2083 2083 HOH HOH . 
K 4 HOH C 84 2084 2084 HOH HOH . 
K 4 HOH C 85 2085 2085 HOH HOH . 
K 4 HOH C 86 2086 2086 HOH HOH . 
K 4 HOH C 87 2087 2087 HOH HOH . 
K 4 HOH C 88 2088 2088 HOH HOH . 
K 4 HOH C 89 2089 2089 HOH HOH . 
K 4 HOH C 90 2090 2090 HOH HOH . 
K 4 HOH C 91 2091 2091 HOH HOH . 
K 4 HOH C 92 2092 2092 HOH HOH . 
K 4 HOH C 93 2093 2093 HOH HOH . 
K 4 HOH C 94 2094 2094 HOH HOH . 
K 4 HOH C 95 2095 2095 HOH HOH . 
K 4 HOH C 96 2096 2096 HOH HOH . 
K 4 HOH C 97 2097 2097 HOH HOH . 
K 4 HOH C 98 2098 2098 HOH HOH . 
K 4 HOH C 99 2099 2099 HOH HOH . 
K 4 HOH C 100 2100 2100 HOH HOH . 
K 4 HOH C 101 2101 2101 HOH HOH . 
K 4 HOH C 102 2102 2102 HOH HOH . 
K 4 HOH C 103 2103 2103 HOH HOH . 
K 4 HOH C 104 2104 2104 HOH HOH . 
K 4 HOH C 105 2105 2105 HOH HOH . 
K 4 HOH C 106 2106 2106 HOH HOH . 
K 4 HOH C 107 2107 2107 HOH HOH . 
K 4 HOH C 108 2108 2108 HOH HOH . 
K 4 HOH C 109 2109 2109 HOH HOH . 
K 4 HOH C 110 2110 2110 HOH HOH . 
K 4 HOH C 111 2111 2111 HOH HOH . 
K 4 HOH C 112 2112 2112 HOH HOH . 
K 4 HOH C 113 2113 2113 HOH HOH . 
K 4 HOH C 114 2114 2114 HOH HOH . 
K 4 HOH C 115 2115 2115 HOH HOH . 
K 4 HOH C 116 2116 2116 HOH HOH . 
K 4 HOH C 117 2117 2117 HOH HOH . 
K 4 HOH C 118 2118 2118 HOH HOH . 
K 4 HOH C 119 2119 2119 HOH HOH . 
K 4 HOH C 120 2120 2120 HOH HOH . 
K 4 HOH C 121 2121 2121 HOH HOH . 
K 4 HOH C 122 2122 2122 HOH HOH . 
K 4 HOH C 123 2123 2123 HOH HOH . 
K 4 HOH C 124 2124 2124 HOH HOH . 
K 4 HOH C 125 2125 2125 HOH HOH . 
K 4 HOH C 126 2126 2126 HOH HOH . 
K 4 HOH C 127 2127 2127 HOH HOH . 
K 4 HOH C 128 2128 2128 HOH HOH . 
K 4 HOH C 129 2129 2129 HOH HOH . 
K 4 HOH C 130 2130 2130 HOH HOH . 
K 4 HOH C 131 2131 2131 HOH HOH . 
K 4 HOH C 132 2132 2132 HOH HOH . 
K 4 HOH C 133 2133 2133 HOH HOH . 
K 4 HOH C 134 2134 2134 HOH HOH . 
K 4 HOH C 135 2135 2135 HOH HOH . 
K 4 HOH C 136 2136 2136 HOH HOH . 
K 4 HOH C 137 2137 2137 HOH HOH . 
K 4 HOH C 138 2138 2138 HOH HOH . 
K 4 HOH C 139 2139 2139 HOH HOH . 
K 4 HOH C 140 2140 2140 HOH HOH . 
K 4 HOH C 141 2141 2141 HOH HOH . 
K 4 HOH C 142 2142 2142 HOH HOH . 
K 4 HOH C 143 2143 2143 HOH HOH . 
K 4 HOH C 144 2144 2144 HOH HOH . 
K 4 HOH C 145 2145 2145 HOH HOH . 
K 4 HOH C 146 2146 2146 HOH HOH . 
K 4 HOH C 147 2147 2147 HOH HOH . 
K 4 HOH C 148 2148 2148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 20.512 -4.319 -22.356 1 61.32 ? C1 EDO 1453 C 1 
HETATM 2 O O1 EDO . . . D 3 19.79 -5.449 -22.857 1 62 ? O1 EDO 1453 C 1 
HETATM 3 C C2 EDO . . . D 3 19.645 -3.503 -21.407 1 61.19 ? C2 EDO 1453 C 1 
HETATM 4 O O2 EDO . . . D 3 19.381 -2.203 -21.96 1 61.08 ? O2 EDO 1453 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#