data_2WY0 # _model_server_result.job_id LBsTpss-zf4MwdDzSkAEUw _model_server_result.datetime_utc '2025-01-06 12:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1456}' # _entry.id 2WY0 # _exptl.entry_id 2WY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2WY0 _cell.length_a 64.65 _cell.length_b 64.65 _cell.length_c 461.82 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -76.97 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 C CYS 18 1_555 A SG CYS 137 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A OH TYR 12 C TYR 12 1_555 G NA NA . C NA 1456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 A OE1 GLU 31 C GLU 31 1_555 D NA NA . C NA 1453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A OE2 GLU 65 C GLU 65 1_555 B NA NA . C NA 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc4 H NA NA . C NA 1457 1_555 I O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2WY0 _atom_sites.fract_transf_matrix[1][1] 0.015468 _atom_sites.fract_transf_matrix[1][2] 0.00893 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA C 1 1451 1451 NA NA . C 3 EDO C 1 1452 1452 EDO EDO . D 2 NA C 1 1453 1453 NA NA . E 3 EDO C 1 1454 1454 EDO EDO . F 3 EDO C 1 1455 1455 EDO EDO . G 2 NA C 1 1456 1456 NA NA . H 2 NA C 1 1457 1457 NA NA . I 4 HOH C 1 2001 2001 HOH HOH . I 4 HOH C 2 2002 2002 HOH HOH . I 4 HOH C 3 2003 2003 HOH HOH . I 4 HOH C 4 2004 2004 HOH HOH . I 4 HOH C 5 2005 2005 HOH HOH . I 4 HOH C 6 2006 2006 HOH HOH . I 4 HOH C 7 2007 2007 HOH HOH . I 4 HOH C 8 2008 2008 HOH HOH . I 4 HOH C 9 2009 2009 HOH HOH . I 4 HOH C 10 2010 2010 HOH HOH . I 4 HOH C 11 2011 2011 HOH HOH . I 4 HOH C 12 2012 2012 HOH HOH . I 4 HOH C 13 2013 2013 HOH HOH . I 4 HOH C 14 2014 2014 HOH HOH . I 4 HOH C 15 2015 2015 HOH HOH . I 4 HOH C 16 2016 2016 HOH HOH . I 4 HOH C 17 2017 2017 HOH HOH . I 4 HOH C 18 2018 2018 HOH HOH . I 4 HOH C 19 2019 2019 HOH HOH . I 4 HOH C 20 2020 2020 HOH HOH . I 4 HOH C 21 2021 2021 HOH HOH . I 4 HOH C 22 2022 2022 HOH HOH . I 4 HOH C 23 2023 2023 HOH HOH . I 4 HOH C 24 2024 2024 HOH HOH . I 4 HOH C 25 2025 2025 HOH HOH . I 4 HOH C 26 2026 2026 HOH HOH . I 4 HOH C 27 2027 2027 HOH HOH . I 4 HOH C 28 2028 2028 HOH HOH . I 4 HOH C 29 2029 2029 HOH HOH . I 4 HOH C 30 2030 2030 HOH HOH . I 4 HOH C 31 2031 2031 HOH HOH . I 4 HOH C 32 2032 2032 HOH HOH . I 4 HOH C 33 2033 2033 HOH HOH . I 4 HOH C 34 2034 2034 HOH HOH . I 4 HOH C 35 2035 2035 HOH HOH . I 4 HOH C 36 2036 2036 HOH HOH . I 4 HOH C 37 2037 2037 HOH HOH . I 4 HOH C 38 2038 2038 HOH HOH . I 4 HOH C 39 2039 2039 HOH HOH . I 4 HOH C 40 2040 2040 HOH HOH . I 4 HOH C 41 2041 2041 HOH HOH . I 4 HOH C 42 2042 2042 HOH HOH . I 4 HOH C 43 2043 2043 HOH HOH . I 4 HOH C 44 2044 2044 HOH HOH . I 4 HOH C 45 2045 2045 HOH HOH . I 4 HOH C 46 2046 2046 HOH HOH . I 4 HOH C 47 2047 2047 HOH HOH . I 4 HOH C 48 2048 2048 HOH HOH . I 4 HOH C 49 2049 2049 HOH HOH . I 4 HOH C 50 2050 2050 HOH HOH . I 4 HOH C 51 2051 2051 HOH HOH . I 4 HOH C 52 2052 2052 HOH HOH . I 4 HOH C 53 2053 2053 HOH HOH . I 4 HOH C 54 2054 2054 HOH HOH . I 4 HOH C 55 2055 2055 HOH HOH . I 4 HOH C 56 2056 2056 HOH HOH . I 4 HOH C 57 2057 2057 HOH HOH . I 4 HOH C 58 2058 2058 HOH HOH . I 4 HOH C 59 2059 2059 HOH HOH . I 4 HOH C 60 2060 2060 HOH HOH . I 4 HOH C 61 2061 2061 HOH HOH . I 4 HOH C 62 2062 2062 HOH HOH . I 4 HOH C 63 2063 2063 HOH HOH . I 4 HOH C 64 2064 2064 HOH HOH . I 4 HOH C 65 2065 2065 HOH HOH . I 4 HOH C 66 2066 2066 HOH HOH . I 4 HOH C 67 2067 2067 HOH HOH . I 4 HOH C 68 2068 2068 HOH HOH . I 4 HOH C 69 2069 2069 HOH HOH . I 4 HOH C 70 2070 2070 HOH HOH . I 4 HOH C 71 2071 2071 HOH HOH . I 4 HOH C 72 2072 2072 HOH HOH . I 4 HOH C 73 2073 2073 HOH HOH . I 4 HOH C 74 2074 2074 HOH HOH . I 4 HOH C 75 2075 2075 HOH HOH . I 4 HOH C 76 2076 2076 HOH HOH . I 4 HOH C 77 2077 2077 HOH HOH . I 4 HOH C 78 2078 2078 HOH HOH . I 4 HOH C 79 2079 2079 HOH HOH . I 4 HOH C 80 2080 2080 HOH HOH . I 4 HOH C 81 2081 2081 HOH HOH . I 4 HOH C 82 2082 2082 HOH HOH . I 4 HOH C 83 2083 2083 HOH HOH . I 4 HOH C 84 2084 2084 HOH HOH . I 4 HOH C 85 2085 2085 HOH HOH . I 4 HOH C 86 2086 2086 HOH HOH . I 4 HOH C 87 2087 2087 HOH HOH . I 4 HOH C 88 2088 2088 HOH HOH . I 4 HOH C 89 2089 2089 HOH HOH . I 4 HOH C 90 2090 2090 HOH HOH . I 4 HOH C 91 2091 2091 HOH HOH . I 4 HOH C 92 2092 2092 HOH HOH . I 4 HOH C 93 2093 2093 HOH HOH . I 4 HOH C 94 2094 2094 HOH HOH . I 4 HOH C 95 2095 2095 HOH HOH . I 4 HOH C 96 2096 2096 HOH HOH . I 4 HOH C 97 2097 2097 HOH HOH . I 4 HOH C 98 2098 2098 HOH HOH . I 4 HOH C 99 2099 2099 HOH HOH . I 4 HOH C 100 2100 2100 HOH HOH . I 4 HOH C 101 2101 2101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.947 _atom_site.Cartn_y -6.735 _atom_site.Cartn_z -23.781 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1456 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #