data_2X0J
#
_model_server_result.job_id            blLqJ6V2jOQkoMdm9vYytg 
_model_server_result.datetime_utc      '2024-10-20 00:35:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1000}' 
#
_entry.id    2X0J 
#
_exptl.entry_id    2X0J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              687.447 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ETHENO-NAD 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2X0J 
_cell.length_a            112.99 
_cell.length_b            112.99 
_cell.length_c            70.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H27 N7 O14 P2' 
_chem_comp.formula_weight    687.447 
_chem_comp.id                ENA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ETHENO-NAD 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ENA doub 83 n y 
N1 C6 ENA sing 84 n y 
N1 C10 ENA sing 85 n y 
O1 P1 ENA doub 86 n n 
P1 O2 ENA sing 87 n n 
P1 O3 ENA sing 88 n n 
P1 O5' ENA sing 89 n n 
C2 N3 ENA sing 90 n y 
O2 P2 ENA sing 91 n n 
P2 O4 ENA sing 92 n n 
P2 O5 ENA sing 93 n n 
P2 O6 ENA doub 94 n n 
N3 C8 ENA doub 95 n y 
C4 N7 ENA doub 96 n y 
C4 N9 ENA sing 97 n y 
O4 C6' ENA sing 98 n n 
C5 C6 ENA doub 99 n y 
C5 N7 ENA sing 100 n y 
C5 C8 ENA sing 101 n y 
C6 N6 ENA sing 102 n y 
N6 C9 ENA sing 103 n y 
C8 N9 ENA sing 104 n y 
C9 C10 ENA doub 105 n y 
N9 C1' ENA sing 106 n n 
C0' C8' ENA sing 107 n n 
C0' O8' ENA sing 108 n n 
C0' C9' ENA sing 109 n n 
C1' C2' ENA sing 110 n n 
C1' O2' ENA sing 111 n n 
N11 C12 ENA doub 112 n y 
N11 C16 ENA sing 113 n y 
N11 C9' ENA sing 114 n n 
C12 C13 ENA sing 115 n y 
C13 C14 ENA doub 116 n y 
C13 C17 ENA sing 117 n n 
C14 C15 ENA sing 118 n y 
C15 C16 ENA doub 119 n y 
C17 N17 ENA sing 120 n n 
C17 O17 ENA doub 121 n n 
C2' C3' ENA sing 122 n n 
C2' O4' ENA sing 123 n n 
O2' C4' ENA sing 124 n n 
C3' O3' ENA sing 125 n n 
C3' C4' ENA sing 126 n n 
C4' C5' ENA sing 127 n n 
C5' O5' ENA sing 128 n n 
C6' C7' ENA sing 129 n n 
O6' C7' ENA sing 130 n n 
O6' C9' ENA sing 131 n n 
C7' C8' ENA sing 132 n n 
O7' C8' ENA sing 133 n n 
C2 H2 ENA sing 134 n n 
C4 H4 ENA sing 135 n n 
N6 HN6 ENA sing 136 n n 
C9 H9 ENA sing 137 n n 
C0' H0' ENA sing 138 n n 
C1' H1' ENA sing 139 n n 
C10 H10 ENA sing 140 n n 
C12 H12 ENA sing 141 n n 
C14 H14 ENA sing 142 n n 
C15 H15 ENA sing 143 n n 
C16 H16 ENA sing 144 n n 
N17 HN17 ENA sing 145 n n 
N17 HN1A ENA sing 146 n n 
C2' H2' ENA sing 147 n n 
C3' H3' ENA sing 148 n n 
O3' HO3' ENA sing 149 n n 
C4' H4' ENA sing 150 n n 
O4' HO4' ENA sing 151 n n 
C5' H5' ENA sing 152 n n 
C5' "H5'A" ENA sing 153 n n 
C6' H6' ENA sing 154 n n 
C6' "H6'A" ENA sing 155 n n 
C7' H7' ENA sing 156 n n 
O7' HO7' ENA sing 157 n n 
C8' H8' ENA sing 158 n n 
O8' HO8' ENA sing 159 n n 
C9' H9' ENA sing 160 n n 
#
_atom_sites.entry_id                     2X0J 
_atom_sites.fract_transf_matrix[1][1]    0.00885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ENA A 1 1000 1000 ENA ENA . 
C 3 SO4 A 1 2000 2000 SO4 SO4 . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ENA . . . B 2 17.024 29.092 16.432 1 77.94 ? N1 ENA 1000 A 1 
HETATM 2 O O1 ENA . . . B 2 17.813 27.263 5.99 1 63.01 ? O1 ENA 1000 A 1 
HETATM 3 P P1 ENA . . . B 2 18.978 28.185 5.821 1 59.62 ? P1 ENA 1000 A 1 
HETATM 4 C C2 ENA . . . B 2 18.246 29.127 15.871 1 67.01 ? C2 ENA 1000 A 1 
HETATM 5 O O2 ENA . . . B 2 18.372 29.563 5.302 1 66.31 ? O2 ENA 1000 A 1 
HETATM 6 P P2 ENA . . . B 2 19.194 30.676 4.544 1 58.77 ? P2 ENA 1000 A 1 
HETATM 7 N N3 ENA . . . B 2 18.429 28.664 14.587 1 59.72 ? N3 ENA 1000 A 1 
HETATM 8 O O3 ENA . . . B 2 20.052 27.666 4.885 1 60.55 ? O3 ENA 1000 A 1 
HETATM 9 C C4 ENA . . . B 2 15.895 27.375 12.458 1 67.06 ? C4 ENA 1000 A 1 
HETATM 10 O O4 ENA . . . B 2 18.433 32.004 4.876 1 50.84 ? O4 ENA 1000 A 1 
HETATM 11 C C5 ENA . . . B 2 16.099 28.149 14.458 1 68.86 ? C5 ENA 1000 A 1 
HETATM 12 O O5 ENA . . . B 2 19.181 30.396 3.057 1 49.2 ? O5 ENA 1000 A 1 
HETATM 13 C C6 ENA . . . B 2 15.953 28.627 15.748 1 71.97 ? C6 ENA 1000 A 1 
HETATM 14 N N6 ENA . . . B 2 14.823 28.715 16.499 1 67.48 ? N6 ENA 1000 A 1 
HETATM 15 O O6 ENA . . . B 2 20.607 30.712 5.068 1 51.65 ? O6 ENA 1000 A 1 
HETATM 16 N N7 ENA . . . B 2 15.198 27.649 13.575 1 68.35 ? N7 ENA 1000 A 1 
HETATM 17 C C8 ENA . . . B 2 17.378 28.175 13.863 1 68.68 ? C8 ENA 1000 A 1 
HETATM 18 C C9 ENA . . . B 2 15.232 29.253 17.677 1 68.54 ? C9 ENA 1000 A 1 
HETATM 19 N N9 ENA . . . B 2 17.214 27.681 12.604 1 66.76 ? N9 ENA 1000 A 1 
HETATM 20 C C0' ENA . . . B 2 16.002 33.83 4.185 1 48.03 ? C0' ENA 1000 A 1 
HETATM 21 C C1' ENA . . . B 2 18.201 27.559 11.558 1 63.01 ? C1' ENA 1000 A 1 
HETATM 22 C C10 ENA . . . B 2 16.582 29.483 17.613 1 74.97 ? C10 ENA 1000 A 1 
HETATM 23 N N11 ENA . . . B 2 17.441 35.818 3.615 1 55.02 ? N11 ENA 1000 A 1 
HETATM 24 C C12 ENA . . . B 2 17.483 37.178 3.704 1 60.04 ? C12 ENA 1000 A 1 
HETATM 25 C C13 ENA . . . B 2 18.071 37.984 2.717 1 46.55 ? C13 ENA 1000 A 1 
HETATM 26 C C14 ENA . . . B 2 18.64 37.369 1.593 1 43.81 ? C14 ENA 1000 A 1 
HETATM 27 C C15 ENA . . . B 2 18.606 35.973 1.539 1 56.69 ? C15 ENA 1000 A 1 
HETATM 28 C C16 ENA . . . B 2 18.016 35.194 2.543 1 51.29 ? C16 ENA 1000 A 1 
HETATM 29 C C17 ENA . . . B 2 18.023 39.457 2.883 1 49.81 ? C17 ENA 1000 A 1 
HETATM 30 N N17 ENA . . . B 2 17.48 40.006 4.079 1 45.6 ? N17 ENA 1000 A 1 
HETATM 31 O O17 ENA . . . B 2 18.185 40.153 1.909 1 53.34 ? O17 ENA 1000 A 1 
HETATM 32 C C2' ENA . . . B 2 18.51 26.295 10.847 1 60.98 ? C2' ENA 1000 A 1 
HETATM 33 O O2' ENA . . . B 2 18.565 28.649 10.759 1 62.38 ? O2' ENA 1000 A 1 
HETATM 34 C C3' ENA . . . B 2 19.379 26.682 9.734 1 66.16 ? C3' ENA 1000 A 1 
HETATM 35 O O3' ENA . . . B 2 20.65 26.224 9.922 1 60.81 ? O3' ENA 1000 A 1 
HETATM 36 C C4' ENA . . . B 2 19.33 28.183 9.692 1 66.79 ? C4' ENA 1000 A 1 
HETATM 37 O O4' ENA . . . B 2 19.049 25.318 11.654 1 54.84 ? O4' ENA 1000 A 1 
HETATM 38 C C5' ENA . . . B 2 18.816 28.718 8.366 1 59.14 ? C5' ENA 1000 A 1 
HETATM 39 O O5' ENA . . . B 2 19.631 28.404 7.238 1 64.55 ? O5' ENA 1000 A 1 
HETATM 40 C C6' ENA . . . B 2 17.899 32.253 6.135 1 42 ? C6' ENA 1000 A 1 
HETATM 41 O O6' ENA . . . B 2 17.589 34.511 5.634 1 52.46 ? O6' ENA 1000 A 1 
HETATM 42 C C7' ENA . . . B 2 16.972 33.412 6.228 1 47.57 ? C7' ENA 1000 A 1 
HETATM 43 O O7' ENA . . . B 2 14.629 33.793 6.08 1 61.19 ? O7' ENA 1000 A 1 
HETATM 44 C C8' ENA . . . B 2 15.708 33.158 5.464 1 47.26 ? C8' ENA 1000 A 1 
HETATM 45 O O8' ENA . . . B 2 14.883 34.28 3.498 1 47.91 ? O8' ENA 1000 A 1 
HETATM 46 C C9' ENA . . . B 2 16.758 35 4.638 1 48 ? C9' ENA 1000 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#