data_2X0N
#
_model_server_result.job_id            uxFwQ2XMSoWolVZ-0L5RPw 
_model_server_result.datetime_utc      '2024-11-29 13:52:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2x0n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":361}' 
#
_entry.id    2X0N 
#
_exptl.entry_id    2X0N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2X0N 
_cell.length_a            135.52 
_cell.length_b            256.27 
_cell.length_c            114.91 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2X0N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L 1 1,2 
C,D,E,F,M,N,O,P,Q,R,S,T,U,V,W,X 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 135.52 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 L N N 
? 3 O N N 
? 3 R N N 
? 3 U N N 
? 3 X N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     2X0N 
_atom_sites.fract_transf_matrix[1][1]    0.007379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SO4 A 1 359 359 SO4 SO4 . 
H 2 SO4 A 1 360 360 SO4 SO4 . 
I 3 NAD A 1 361 361 NAD NAD . 
J 2 SO4 B 1 359 359 SO4 SO4 . 
K 2 SO4 B 1 360 360 SO4 SO4 . 
L 3 NAD B 1 361 361 NAD NAD . 
M 2 SO4 O 1 359 359 SO4 SO4 . 
N 2 SO4 O 1 360 360 SO4 SO4 . 
O 3 NAD O 1 361 361 NAD NAD . 
P 2 SO4 P 1 359 359 SO4 SO4 . 
Q 2 SO4 P 1 360 360 SO4 SO4 . 
R 3 NAD P 1 361 361 NAD NAD . 
S 2 SO4 Q 1 359 359 SO4 SO4 . 
T 2 SO4 Q 1 360 360 SO4 SO4 . 
U 3 NAD Q 1 361 361 NAD NAD . 
V 2 SO4 R 1 359 359 SO4 SO4 . 
W 2 SO4 R 1 360 360 SO4 SO4 . 
X 3 NAD R 1 361 361 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . U 3 13.121 46.265 9.903 1 35.71 ? PA NAD 361 Q 1 
HETATM 2 O O1A NAD . . . U 3 13.655 46.014 11.35 1 0.92 ? O1A NAD 361 Q 1 
HETATM 3 O O2A NAD . . . U 3 13.582 47.572 9.188 1 12.55 ? O2A NAD 361 Q 1 
HETATM 4 O O5B NAD . . . U 3 12.533 45.145 8.961 1 49.34 ? O5B NAD 361 Q 1 
HETATM 5 C C5B NAD . . . U 3 11.786 44.084 9.437 1 49.45 ? C5B NAD 361 Q 1 
HETATM 6 C C4B NAD . . . U 3 10.456 43.925 8.754 1 51.6 ? C4B NAD 361 Q 1 
HETATM 7 O O4B NAD . . . U 3 9.993 42.595 8.706 1 51.56 ? O4B NAD 361 Q 1 
HETATM 8 C C3B NAD . . . U 3 9.409 44.712 9.461 1 54.28 ? C3B NAD 361 Q 1 
HETATM 9 O O3B NAD . . . U 3 9.219 45.925 8.829 1 54.55 ? O3B NAD 361 Q 1 
HETATM 10 C C2B NAD . . . U 3 8.207 43.883 9.404 1 53.79 ? C2B NAD 361 Q 1 
HETATM 11 O O2B NAD . . . U 3 7.159 44.566 8.807 1 51.26 ? O2B NAD 361 Q 1 
HETATM 12 C C1B NAD . . . U 3 8.619 42.687 8.592 1 52.64 ? C1B NAD 361 Q 1 
HETATM 13 N N9A NAD . . . U 3 7.993 41.448 8.991 1 48.48 ? N9A NAD 361 Q 1 
HETATM 14 C C8A NAD . . . U 3 8.023 40.906 10.217 1 43.86 ? C8A NAD 361 Q 1 
HETATM 15 N N7A NAD . . . U 3 7.457 39.69 10.139 1 42.64 ? N7A NAD 361 Q 1 
HETATM 16 C C5A NAD . . . U 3 7.128 39.437 8.859 1 42.13 ? C5A NAD 361 Q 1 
HETATM 17 C C6A NAD . . . U 3 6.53 38.365 8.171 1 36.48 ? C6A NAD 361 Q 1 
HETATM 18 N N6A NAD . . . U 3 6.163 37.183 8.894 1 30.25 ? N6A NAD 361 Q 1 
HETATM 19 N N1A NAD . . . U 3 6.323 38.439 6.844 1 38.7 ? N1A NAD 361 Q 1 
HETATM 20 C C2A NAD . . . U 3 6.688 39.545 6.172 1 42.9 ? C2A NAD 361 Q 1 
HETATM 21 N N3A NAD . . . U 3 7.262 40.599 6.781 1 47.16 ? N3A NAD 361 Q 1 
HETATM 22 C C4A NAD . . . U 3 7.488 40.564 8.109 1 47.67 ? C4A NAD 361 Q 1 
HETATM 23 O O3 NAD . . . U 3 14.417 45.445 9.436 1 202.62 ? O3 NAD 361 Q 1 
HETATM 24 P PN NAD . . . U 3 15.954 45.835 9.428 1 66.15 ? PN NAD 361 Q 1 
HETATM 25 O O1N NAD . . . U 3 16.282 46.627 10.675 1 67.83 ? O1N NAD 361 Q 1 
HETATM 26 O O2N NAD . . . U 3 16.253 46.656 8.195 1 63.68 ? O2N NAD 361 Q 1 
HETATM 27 O O5D NAD . . . U 3 16.879 44.553 9.37 1 26.86 ? O5D NAD 361 Q 1 
HETATM 28 C C5D NAD . . . U 3 16.393 43.342 8.858 1 33.46 ? C5D NAD 361 Q 1 
HETATM 29 C C4D NAD . . . U 3 17.294 42.111 8.779 1 40.64 ? C4D NAD 361 Q 1 
HETATM 30 O O4D NAD . . . U 3 18.431 42.331 8.026 1 43.97 ? O4D NAD 361 Q 1 
HETATM 31 C C3D NAD . . . U 3 17.752 41.596 10.122 1 41.92 ? C3D NAD 361 Q 1 
HETATM 32 O O3D NAD . . . U 3 17.704 40.229 10.136 1 41.93 ? O3D NAD 361 Q 1 
HETATM 33 C C2D NAD . . . U 3 19.131 42.094 10.283 1 42.8 ? C2D NAD 361 Q 1 
HETATM 34 O O2D NAD . . . U 3 19.907 41.281 11.078 1 42.16 ? O2D NAD 361 Q 1 
HETATM 35 C C1D NAD . . . U 3 19.63 42.113 8.879 1 44.23 ? C1D NAD 361 Q 1 
HETATM 36 N N1N NAD . . . U 3 20.87 42.984 8.553 1 47.05 ? N1N NAD 361 Q 1 
HETATM 37 C C2N NAD . . . U 3 20.844 44.295 8.822 1 44.55 ? C2N NAD 361 Q 1 
HETATM 38 C C3N NAD . . . U 3 21.925 45.122 8.504 1 44 ? C3N NAD 361 Q 1 
HETATM 39 C C7N NAD . . . U 3 21.894 46.58 8.825 1 42.05 ? C7N NAD 361 Q 1 
HETATM 40 O O7N NAD . . . U 3 22.678 47.023 9.661 1 44.33 ? O7N NAD 361 Q 1 
HETATM 41 N N7N NAD . . . U 3 20.911 47.425 8.194 1 36.72 ? N7N NAD 361 Q 1 
HETATM 42 C C4N NAD . . . U 3 23.042 44.558 7.894 1 47.25 ? C4N NAD 361 Q 1 
HETATM 43 C C5N NAD . . . U 3 23.039 43.19 7.62 1 51.66 ? C5N NAD 361 Q 1 
HETATM 44 C C6N NAD . . . U 3 21.923 42.416 7.963 1 50.66 ? C6N NAD 361 Q 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    268 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#