data_2X10 # _model_server_result.job_id NDPUpLmUGTloj1n7EZ1_kA _model_server_result.datetime_utc '2025-04-21 14:18:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1531}' # _entry.id 2X10 # _exptl.entry_id 2X10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.02 _cell.angle_beta 98.22 _cell.angle_gamma 112.12 _cell.entry_id 2X10 _cell.length_a 41.92 _cell.length_b 44.65 _cell.length_c 93.42 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 70 1_555 A SG CYS 190 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 107 A CYS 105 1_555 A SG CYS 117 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 203 A CYS 201 1_555 A SG CYS 249 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 232 A CYS 230 1_555 A SG CYS 262 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 264 A CYS 262 1_555 A SG CYS 275 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 278 A CYS 276 1_555 A SG CYS 292 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 295 A CYS 293 1_555 A SG CYS 309 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 311 A CYS 309 1_555 A SG CYS 327 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 A SG CYS 368 A CYS 366 1_555 A SG CYS 381 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C LEU 56 A LEU 54 1_555 A N MSE 57 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 57 A MSE 55 1_555 A N GLN 58 A GLN 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ILE 60 A ILE 58 1_555 A N MSE 61 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 61 A MSE 59 1_555 A N ASN 62 A ASN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C ASP 63 A ASP 61 1_555 A N MSE 64 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 64 A MSE 62 1_555 A N PRO 65 A PRO 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale7 A C TYR 67 A TYR 65 1_555 A N MSE 68 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 68 A MSE 66 1_555 A N TYR 69 A TYR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C VAL 74 A VAL 72 1_555 A N MSE 75 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 75 A MSE 73 1_555 A N SER 76 A SER 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ARG 246 A ARG 244 1_555 A N MSE 247 A MSE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 247 A MSE 245 1_555 A N HIS 248 A HIS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C SER 324 A SER 322 1_555 A N MSE 325 A MSE 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 325 A MSE 323 1_555 A N PRO 326 A PRO 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale15 A C GLY 341 A GLY 339 1_555 A N MSE 342 A MSE 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 A C MSE 342 A MSE 340 1_555 A N GLY 343 A GLY 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C HIS 407 A HIS 405 1_555 A N MSE 408 A MSE 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 A C MSE 408 A MSE 406 1_555 A N ASN 409 A ASN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 A ND2 ASN 409 A ASN 407 1_555 C C1 NAG . A NAG 1531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2X10 _atom_sites.fract_transf_matrix[1][1] 0.023855 _atom_sites.fract_transf_matrix[1][2] 0.009696 _atom_sites.fract_transf_matrix[1][3] 0.004604 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024176 _atom_sites.fract_transf_matrix[2][3] 0.002828 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 1530 1530 CL CL . C 3 NAG A 1 1531 1531 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 12.385 -22.499 -37.537 1 122.21 ? C1 NAG 1531 A 1 HETATM 2 C C2 NAG . . . C 3 13.462 -23.159 -36.672 1 122.44 ? C2 NAG 1531 A 1 HETATM 3 C C3 NAG . . . C 3 14.881 -22.672 -36.986 1 122.19 ? C3 NAG 1531 A 1 HETATM 4 C C4 NAG . . . C 3 15.122 -22.519 -38.482 1 122.98 ? C4 NAG 1531 A 1 HETATM 5 C C5 NAG . . . C 3 13.891 -21.938 -39.162 1 122.76 ? C5 NAG 1531 A 1 HETATM 6 C C6 NAG . . . C 3 14.027 -21.832 -40.666 1 123.84 ? C6 NAG 1531 A 1 HETATM 7 C C7 NAG . . . C 3 13.984 -23.334 -34.283 1 121.56 ? C7 NAG 1531 A 1 HETATM 8 C C8 NAG . . . C 3 13.434 -24.222 -33.201 1 122.21 ? C8 NAG 1531 A 1 HETATM 9 N N2 NAG . . . C 3 13.145 -22.996 -35.263 1 121.52 ? N2 NAG 1531 A 1 HETATM 10 O O3 NAG . . . C 3 15.833 -23.582 -36.463 1 123.02 ? O3 NAG 1531 A 1 HETATM 11 O O4 NAG . . . C 3 16.229 -21.663 -38.701 1 122.45 ? O4 NAG 1531 A 1 HETATM 12 O O5 NAG . . . C 3 12.754 -22.718 -38.873 1 123.35 ? O5 NAG 1531 A 1 HETATM 13 O O6 NAG . . . C 3 13.125 -20.811 -41.048 1 123.17 ? O6 NAG 1531 A 1 HETATM 14 O O7 NAG . . . C 3 15.156 -22.955 -34.245 1 121.27 ? O7 NAG 1531 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #