data_2X15 # _model_server_result.job_id dbajox01g6G2VeiTB8JRww _model_server_result.datetime_utc '2024-12-01 04:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1419}' # _entry.id 2X15 # _exptl.entry_id 2X15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X15 _cell.length_a 38.73 _cell.length_b 91.75 _cell.length_c 108.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 374 A ASP 375 1_555 B MG MG . A MG 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 B MG MG . A MG 1418 1_555 C O3B ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 B MG MG . A MG 1418 1_555 C O2A ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 B MG MG . A MG 1418 1_555 D OAH X15 . A X15 1420 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B MG MG . A MG 1418 1_555 F O3G ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 B MG MG . A MG 1418 1_555 F O1B ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.758 ? metalc ? metalc7 B MG MG . A MG 1418 1_555 F O1A ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc9 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 18 n n PB O2B ADP sing 19 n n PB O3B ADP sing 20 n n PB O3A ADP sing 21 n n O2B HOB2 ADP sing 22 n n O3B HOB3 ADP sing 23 n n PA O1A ADP doub 24 n n PA O2A ADP sing 25 n n PA O3A ADP sing 26 n n PA O5' ADP sing 27 n n O2A HOA2 ADP sing 28 n n O5' C5' ADP sing 29 n n C5' C4' ADP sing 30 n n C5' "H5'1" ADP sing 31 n n C5' "H5'2" ADP sing 32 n n C4' O4' ADP sing 33 n n C4' C3' ADP sing 34 n n C4' H4' ADP sing 35 n n O4' C1' ADP sing 36 n n C3' O3' ADP sing 37 n n C3' C2' ADP sing 38 n n C3' H3' ADP sing 39 n n O3' HO3' ADP sing 40 n n C2' O2' ADP sing 41 n n C2' C1' ADP sing 42 n n C2' H2' ADP sing 43 n n O2' HO2' ADP sing 44 n n C1' N9 ADP sing 45 n n C1' H1' ADP sing 46 n n N9 C8 ADP sing 47 n y N9 C4 ADP sing 48 n y C8 N7 ADP doub 49 n y C8 H8 ADP sing 50 n n N7 C5 ADP sing 51 n y C5 C6 ADP sing 52 n y C5 C4 ADP doub 53 n y C6 N6 ADP sing 54 n n C6 N1 ADP doub 55 n y N6 HN61 ADP sing 56 n n N6 HN62 ADP sing 57 n n N1 C2 ADP sing 58 n y C2 N3 ADP doub 59 n y C2 H2 ADP sing 60 n n N3 C4 ADP sing 61 n y # _atom_sites.entry_id 2X15 _atom_sites.fract_transf_matrix[1][1] 0.02582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1418 1418 MG MG . C 3 ADP A 1 1419 1419 ADP ADP . D 4 X15 A 1 1420 1420 X15 X15 . E 5 3PG A 1 1421 1421 3PG 3PG . F 6 ATP A 1 1422 1422 ATP ATP . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . G 7 HOH A 52 2052 2052 HOH HOH . G 7 HOH A 53 2053 2053 HOH HOH . G 7 HOH A 54 2054 2054 HOH HOH . G 7 HOH A 55 2055 2055 HOH HOH . G 7 HOH A 56 2056 2056 HOH HOH . G 7 HOH A 57 2057 2057 HOH HOH . G 7 HOH A 58 2058 2058 HOH HOH . G 7 HOH A 59 2059 2059 HOH HOH . G 7 HOH A 60 2060 2060 HOH HOH . G 7 HOH A 61 2061 2061 HOH HOH . G 7 HOH A 62 2062 2062 HOH HOH . G 7 HOH A 63 2063 2063 HOH HOH . G 7 HOH A 64 2064 2064 HOH HOH . G 7 HOH A 65 2065 2065 HOH HOH . G 7 HOH A 66 2066 2066 HOH HOH . G 7 HOH A 67 2067 2067 HOH HOH . G 7 HOH A 68 2068 2068 HOH HOH . G 7 HOH A 69 2069 2069 HOH HOH . G 7 HOH A 70 2070 2070 HOH HOH . G 7 HOH A 71 2071 2071 HOH HOH . G 7 HOH A 72 2072 2072 HOH HOH . G 7 HOH A 73 2073 2073 HOH HOH . G 7 HOH A 74 2074 2074 HOH HOH . G 7 HOH A 75 2075 2075 HOH HOH . G 7 HOH A 76 2076 2076 HOH HOH . G 7 HOH A 77 2077 2077 HOH HOH . G 7 HOH A 78 2078 2078 HOH HOH . G 7 HOH A 79 2079 2079 HOH HOH . G 7 HOH A 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . A . C 3 5.107 -9.017 -22.513 0.8 18.54 ? PB ADP 1419 A 1 HETATM 2 O O1B ADP . A . C 3 3.605 -9.175 -22.659 0.8 20.76 ? O1B ADP 1419 A 1 HETATM 3 O O2B ADP . A . C 3 5.657 -7.867 -23.323 0.8 16.88 ? O2B ADP 1419 A 1 HETATM 4 O O3B ADP . A . C 3 5.56 -8.987 -21.072 0.8 16.41 ? O3B ADP 1419 A 1 HETATM 5 P PA ADP . A . C 3 5.346 -11.852 -22.813 0.8 14.98 ? PA ADP 1419 A 1 HETATM 6 O O1A ADP . A . C 3 4.254 -12.545 -23.581 0.8 17.58 ? O1A ADP 1419 A 1 HETATM 7 O O2A ADP . A . C 3 5.246 -11.873 -21.314 0.8 14.94 ? O2A ADP 1419 A 1 HETATM 8 O O3A ADP . A . C 3 5.587 -10.333 -23.291 0.8 15.91 ? O3A ADP 1419 A 1 HETATM 9 O O5' ADP . A . C 3 6.732 -12.495 -23.312 0.8 15.95 ? O5' ADP 1419 A 1 HETATM 10 C C5' ADP . A . C 3 7.933 -11.976 -22.774 0.8 17.82 ? C5' ADP 1419 A 1 HETATM 11 C C4' ADP . A . C 3 8.999 -13.057 -22.713 0.8 19.3 ? C4' ADP 1419 A 1 HETATM 12 O O4' ADP . A . C 3 9.098 -13.792 -23.928 0.8 20.31 ? O4' ADP 1419 A 1 HETATM 13 C C3' ADP . A . C 3 10.392 -12.463 -22.515 0.8 19.16 ? C3' ADP 1419 A 1 HETATM 14 O O3' ADP . A . C 3 10.769 -12.641 -21.166 0.8 18.4 ? O3' ADP 1419 A 1 HETATM 15 C C2' ADP . A . C 3 11.275 -13.242 -23.48 0.8 18.48 ? C2' ADP 1419 A 1 HETATM 16 O O2' ADP . A . C 3 12.489 -13.667 -22.856 0.8 16.6 ? O2' ADP 1419 A 1 HETATM 17 C C1' ADP . A . C 3 10.388 -14.399 -23.906 0.8 18.43 ? C1' ADP 1419 A 1 HETATM 18 N N9 ADP . A . C 3 10.765 -14.985 -25.219 0.8 17.97 ? N9 ADP 1419 A 1 HETATM 19 C C8 ADP . A . C 3 10.892 -14.334 -26.397 0.8 16.18 ? C8 ADP 1419 A 1 HETATM 20 N N7 ADP . A . C 3 11.238 -15.189 -27.405 0.8 16.29 ? N7 ADP 1419 A 1 HETATM 21 C C5 ADP . A . C 3 11.347 -16.411 -26.84 0.8 18.15 ? C5 ADP 1419 A 1 HETATM 22 C C6 ADP . A . C 3 11.7 -17.748 -27.305 0.8 16.09 ? C6 ADP 1419 A 1 HETATM 23 N N6 ADP . A . C 3 12.024 -17.931 -28.601 0.8 19.96 ? N6 ADP 1419 A 1 HETATM 24 N N1 ADP . A . C 3 11.674 -18.751 -26.419 0.8 17.81 ? N1 ADP 1419 A 1 HETATM 25 C C2 ADP . A . C 3 11.392 -18.572 -25.118 0.8 17.26 ? C2 ADP 1419 A 1 HETATM 26 N N3 ADP . A . C 3 11.068 -17.373 -24.622 0.8 17.75 ? N3 ADP 1419 A 1 HETATM 27 C C4 ADP . A . C 3 11.036 -16.278 -25.411 0.8 18.11 ? C4 ADP 1419 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #