data_2X15 # _model_server_result.job_id lCgB5OFZD6MQEPlwKGRYeA _model_server_result.datetime_utc '2024-11-06 23:48:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1421}' # _entry.id 2X15 # _exptl.entry_id 2X15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X15 _cell.length_a 38.73 _cell.length_b 91.75 _cell.length_c 108.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 374 A ASP 375 1_555 B MG MG . A MG 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 B MG MG . A MG 1418 1_555 C O3B ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 B MG MG . A MG 1418 1_555 C O2A ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 B MG MG . A MG 1418 1_555 D OAH X15 . A X15 1420 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B MG MG . A MG 1418 1_555 F O3G ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 B MG MG . A MG 1418 1_555 F O1B ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.758 ? metalc ? metalc7 B MG MG . A MG 1418 1_555 F O1A ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc9 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 2X15 _atom_sites.fract_transf_matrix[1][1] 0.02582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1418 1418 MG MG . C 3 ADP A 1 1419 1419 ADP ADP . D 4 X15 A 1 1420 1420 X15 X15 . E 5 3PG A 1 1421 1421 3PG 3PG . F 6 ATP A 1 1422 1422 ATP ATP . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . G 7 HOH A 52 2052 2052 HOH HOH . G 7 HOH A 53 2053 2053 HOH HOH . G 7 HOH A 54 2054 2054 HOH HOH . G 7 HOH A 55 2055 2055 HOH HOH . G 7 HOH A 56 2056 2056 HOH HOH . G 7 HOH A 57 2057 2057 HOH HOH . G 7 HOH A 58 2058 2058 HOH HOH . G 7 HOH A 59 2059 2059 HOH HOH . G 7 HOH A 60 2060 2060 HOH HOH . G 7 HOH A 61 2061 2061 HOH HOH . G 7 HOH A 62 2062 2062 HOH HOH . G 7 HOH A 63 2063 2063 HOH HOH . G 7 HOH A 64 2064 2064 HOH HOH . G 7 HOH A 65 2065 2065 HOH HOH . G 7 HOH A 66 2066 2066 HOH HOH . G 7 HOH A 67 2067 2067 HOH HOH . G 7 HOH A 68 2068 2068 HOH HOH . G 7 HOH A 69 2069 2069 HOH HOH . G 7 HOH A 70 2070 2070 HOH HOH . G 7 HOH A 71 2071 2071 HOH HOH . G 7 HOH A 72 2072 2072 HOH HOH . G 7 HOH A 73 2073 2073 HOH HOH . G 7 HOH A 74 2074 2074 HOH HOH . G 7 HOH A 75 2075 2075 HOH HOH . G 7 HOH A 76 2076 2076 HOH HOH . G 7 HOH A 77 2077 2077 HOH HOH . G 7 HOH A 78 2078 2078 HOH HOH . G 7 HOH A 79 2079 2079 HOH HOH . G 7 HOH A 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . B . E 5 1.069 -9.004 -17.733 0.2 21.25 ? C1 3PG 1421 A 1 HETATM 2 O O1 3PG . B . E 5 2.27 -8.678 -17.567 0.2 20.33 ? O1 3PG 1421 A 1 HETATM 3 O O2 3PG . B . E 5 0.665 -9.553 -18.76 0.2 20.22 ? O2 3PG 1421 A 1 HETATM 4 C C2 3PG . B . E 5 0.04 -8.715 -16.68 0.2 21.89 ? C2 3PG 1421 A 1 HETATM 5 O O3 3PG . B . E 5 0.663 -8.421 -15.432 0.2 22.63 ? O3 3PG 1421 A 1 HETATM 6 C C3 3PG . B . E 5 -0.872 -9.92 -16.505 0.2 22.44 ? C3 3PG 1421 A 1 HETATM 7 O O1P 3PG . B . E 5 -0.06 -11.066 -16.292 0.2 21.96 ? O1P 3PG 1421 A 1 HETATM 8 P P 3PG . B . E 5 -0.601 -12.538 -16.624 0.2 21.79 ? P 3PG 1421 A 1 HETATM 9 O O2P 3PG . B . E 5 0.269 -13.478 -15.81 0.2 20.95 ? O2P 3PG 1421 A 1 HETATM 10 O O3P 3PG . B . E 5 -2.038 -12.499 -16.169 0.2 21.14 ? O3P 3PG 1421 A 1 HETATM 11 O O4P 3PG . B . E 5 -0.385 -12.641 -18.11 0.2 20.01 ? O4P 3PG 1421 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #