data_2X15 # _model_server_result.job_id UhNVszQ55gc2CDG0ppByYg _model_server_result.datetime_utc '2024-11-06 23:35:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1422}' # _entry.id 2X15 # _exptl.entry_id 2X15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X15 _cell.length_a 38.73 _cell.length_b 91.75 _cell.length_c 108.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 374 A ASP 375 1_555 B MG MG . A MG 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 B MG MG . A MG 1418 1_555 C O3B ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 B MG MG . A MG 1418 1_555 C O2A ADP . A ADP 1419 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 B MG MG . A MG 1418 1_555 D OAH X15 . A X15 1420 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B MG MG . A MG 1418 1_555 F O3G ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 B MG MG . A MG 1418 1_555 F O1B ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.758 ? metalc ? metalc7 B MG MG . A MG 1418 1_555 F O1A ATP . A ATP 1422 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.035 ? metalc ? metalc8 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc9 B MG MG . A MG 1418 1_555 G O HOH . A HOH 2080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 131 n n PG O2G ATP sing 132 n n PG O3G ATP sing 133 n n PG O3B ATP sing 134 n n O2G HOG2 ATP sing 135 n n O3G HOG3 ATP sing 136 n n PB O1B ATP doub 137 n n PB O2B ATP sing 138 n n PB O3B ATP sing 139 n n PB O3A ATP sing 140 n n O2B HOB2 ATP sing 141 n n PA O1A ATP doub 142 n n PA O2A ATP sing 143 n n PA O3A ATP sing 144 n n PA O5' ATP sing 145 n n O2A HOA2 ATP sing 146 n n O5' C5' ATP sing 147 n n C5' C4' ATP sing 148 n n C5' "H5'1" ATP sing 149 n n C5' "H5'2" ATP sing 150 n n C4' O4' ATP sing 151 n n C4' C3' ATP sing 152 n n C4' H4' ATP sing 153 n n O4' C1' ATP sing 154 n n C3' O3' ATP sing 155 n n C3' C2' ATP sing 156 n n C3' H3' ATP sing 157 n n O3' HO3' ATP sing 158 n n C2' O2' ATP sing 159 n n C2' C1' ATP sing 160 n n C2' H2' ATP sing 161 n n O2' HO2' ATP sing 162 n n C1' N9 ATP sing 163 n n C1' H1' ATP sing 164 n n N9 C8 ATP sing 165 n y N9 C4 ATP sing 166 n y C8 N7 ATP doub 167 n y C8 H8 ATP sing 168 n n N7 C5 ATP sing 169 n y C5 C6 ATP sing 170 n y C5 C4 ATP doub 171 n y C6 N6 ATP sing 172 n n C6 N1 ATP doub 173 n y N6 HN61 ATP sing 174 n n N6 HN62 ATP sing 175 n n N1 C2 ATP sing 176 n y C2 N3 ATP doub 177 n y C2 H2 ATP sing 178 n n N3 C4 ATP sing 179 n y # _atom_sites.entry_id 2X15 _atom_sites.fract_transf_matrix[1][1] 0.02582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1418 1418 MG MG . C 3 ADP A 1 1419 1419 ADP ADP . D 4 X15 A 1 1420 1420 X15 X15 . E 5 3PG A 1 1421 1421 3PG 3PG . F 6 ATP A 1 1422 1422 ATP ATP . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . G 7 HOH A 52 2052 2052 HOH HOH . G 7 HOH A 53 2053 2053 HOH HOH . G 7 HOH A 54 2054 2054 HOH HOH . G 7 HOH A 55 2055 2055 HOH HOH . G 7 HOH A 56 2056 2056 HOH HOH . G 7 HOH A 57 2057 2057 HOH HOH . G 7 HOH A 58 2058 2058 HOH HOH . G 7 HOH A 59 2059 2059 HOH HOH . G 7 HOH A 60 2060 2060 HOH HOH . G 7 HOH A 61 2061 2061 HOH HOH . G 7 HOH A 62 2062 2062 HOH HOH . G 7 HOH A 63 2063 2063 HOH HOH . G 7 HOH A 64 2064 2064 HOH HOH . G 7 HOH A 65 2065 2065 HOH HOH . G 7 HOH A 66 2066 2066 HOH HOH . G 7 HOH A 67 2067 2067 HOH HOH . G 7 HOH A 68 2068 2068 HOH HOH . G 7 HOH A 69 2069 2069 HOH HOH . G 7 HOH A 70 2070 2070 HOH HOH . G 7 HOH A 71 2071 2071 HOH HOH . G 7 HOH A 72 2072 2072 HOH HOH . G 7 HOH A 73 2073 2073 HOH HOH . G 7 HOH A 74 2074 2074 HOH HOH . G 7 HOH A 75 2075 2075 HOH HOH . G 7 HOH A 76 2076 2076 HOH HOH . G 7 HOH A 77 2077 2077 HOH HOH . G 7 HOH A 78 2078 2078 HOH HOH . G 7 HOH A 79 2079 2079 HOH HOH . G 7 HOH A 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . B . F 6 2.622 -9.162 -21.336 0.2 4.69 ? PG ATP 1422 A 1 HETATM 2 O O1G ATP . B . F 6 2.658 -7.602 -21.012 0.2 8.83 ? O1G ATP 1422 A 1 HETATM 3 O O2G ATP . B . F 6 1.106 -9.454 -21.838 0.2 9.18 ? O2G ATP 1422 A 1 HETATM 4 O O3G ATP . B . F 6 2.888 -9.989 -20.136 0.2 10.28 ? O3G ATP 1422 A 1 HETATM 5 P PB ATP . B . F 6 5.227 -9.315 -22.388 0.2 12.16 ? PB ATP 1422 A 1 HETATM 6 O O1B ATP . B . F 6 5.613 -9.146 -20.829 0.2 12.57 ? O1B ATP 1422 A 1 HETATM 7 O O2B ATP . B . F 6 5.853 -8.203 -23.161 0.2 11.69 ? O2B ATP 1422 A 1 HETATM 8 O O3B ATP . B . F 6 3.612 -9.364 -22.518 0.2 11.27 ? O3B ATP 1422 A 1 HETATM 9 P PA ATP . B . F 6 5.183 -12.146 -22.664 0.2 8.02 ? PA ATP 1422 A 1 HETATM 10 O O1A ATP . B . F 6 5.101 -12.152 -21.069 0.2 8.5 ? O1A ATP 1422 A 1 HETATM 11 O O2A ATP . B . F 6 3.913 -12.56 -23.283 0.2 9.45 ? O2A ATP 1422 A 1 HETATM 12 O O3A ATP . B . F 6 5.564 -10.647 -23.103 0.2 11.69 ? O3A ATP 1422 A 1 HETATM 13 O O5' ATP . B . F 6 6.504 -12.944 -23.125 0.2 11.18 ? O5' ATP 1422 A 1 HETATM 14 C C5' ATP . B . F 6 7.75 -12.372 -22.802 0.2 13.41 ? C5' ATP 1422 A 1 HETATM 15 C C4' ATP . B . F 6 8.808 -13.424 -22.722 0.2 16.43 ? C4' ATP 1422 A 1 HETATM 16 O O4' ATP . B . F 6 8.998 -13.937 -24.039 0.2 18.77 ? O4' ATP 1422 A 1 HETATM 17 C C3' ATP . B . F 6 10.172 -12.786 -22.424 0.2 17.66 ? C3' ATP 1422 A 1 HETATM 18 O O3' ATP . B . F 6 10.535 -13.096 -21.09 0.2 17.24 ? O3' ATP 1422 A 1 HETATM 19 C C2' ATP . B . F 6 11.104 -13.511 -23.404 0.2 17.42 ? C2' ATP 1422 A 1 HETATM 20 O O2' ATP . B . F 6 12.227 -13.995 -22.691 0.2 15.99 ? O2' ATP 1422 A 1 HETATM 21 C C1' ATP . B . F 6 10.231 -14.665 -23.891 0.2 17.49 ? C1' ATP 1422 A 1 HETATM 22 N N9 ATP . B . F 6 10.647 -15.24 -25.202 0.2 18.06 ? N9 ATP 1422 A 1 HETATM 23 C C8 ATP . B . F 6 10.745 -14.58 -26.364 0.2 17.55 ? C8 ATP 1422 A 1 HETATM 24 N N7 ATP . B . F 6 11.138 -15.419 -27.331 0.2 17.94 ? N7 ATP 1422 A 1 HETATM 25 C C5 ATP . B . F 6 11.284 -16.621 -26.766 0.2 18.93 ? C5 ATP 1422 A 1 HETATM 26 C C6 ATP . B . F 6 11.673 -17.849 -27.247 0.2 18.38 ? C6 ATP 1422 A 1 HETATM 27 N N6 ATP . B . F 6 11.996 -17.978 -28.525 0.2 20.6 ? N6 ATP 1422 A 1 HETATM 28 N N1 ATP . B . F 6 11.721 -18.894 -26.419 0.2 19.81 ? N1 ATP 1422 A 1 HETATM 29 C C2 ATP . B . F 6 11.421 -18.759 -25.139 0.2 19.19 ? C2 ATP 1422 A 1 HETATM 30 N N3 ATP . B . F 6 11.053 -17.59 -24.647 0.2 18.94 ? N3 ATP 1422 A 1 HETATM 31 C C4 ATP . B . F 6 10.979 -16.509 -25.429 0.2 18.61 ? C4 ATP 1422 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #