data_2X2B # _model_server_result.job_id Nzy2yPBknpa-QX1H1MfKGQ _model_server_result.datetime_utc '2025-01-21 01:28:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2X2B # _exptl.entry_id 2X2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.394 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-3-oxopropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X2B _cell.length_a 96.944 _cell.length_b 96.944 _cell.length_c 98.816 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+3/2,y,-z+3/4 -1 0 0 0 1 0 0 0 -1 145.416 0 74.112 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 37 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id SXM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SXM _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.879 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H25 N2 O10 P S' _chem_comp.formula_weight 444.394 _chem_comp.id SXM _chem_comp.mon_nstd_flag . _chem_comp.name '3-{[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-3-oxopropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'THIOMALONIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P24 O27 SXM sing 237 n n P24 O23 SXM sing 238 n n O26 P24 SXM sing 239 n n O26 HO26 SXM sing 240 n n O23 HO23 SXM sing 241 n n C28 O27 SXM sing 242 n n C28 H28 SXM sing 243 n n C28 C29 SXM sing 244 n n C29 C31 SXM sing 245 n n C30 C29 SXM sing 246 n n C30 H30 SXM sing 247 n n C30 H30A SXM sing 248 n n C31 H31A SXM sing 249 n n C31 H31B SXM sing 250 n n C31 H31 SXM sing 251 n n C32 C29 SXM sing 252 n n C32 C34 SXM sing 253 n n C32 H32 SXM sing 254 n n O33 C32 SXM sing 255 n n C34 O35 SXM doub 256 n n N36 C34 SXM sing 257 n n C37 N36 SXM sing 258 n n C37 H37A SXM sing 259 n n C37 H37 SXM sing 260 n n C38 C37 SXM sing 261 n n C39 C38 SXM sing 262 n n C39 O40 SXM doub 263 n n N41 C39 SXM sing 264 n n C42 N41 SXM sing 265 n n C42 H42 SXM sing 266 n n C43 C42 SXM sing 267 n n C43 H43 SXM sing 268 n n S1 C43 SXM sing 269 n n S1 C1 SXM sing 270 n n C1 O1 SXM doub 271 n n C2 C1 SXM sing 272 n n C2 C3 SXM sing 273 n n C2 H2 SXM sing 274 n n C3 O3B SXM sing 275 n n O3A C3 SXM doub 276 n n O3B HO3B SXM sing 277 n n H28A C28 SXM sing 278 n n H30B C30 SXM sing 279 n n HO33 O33 SXM sing 280 n n HN36 N36 SXM sing 281 n n H38 C38 SXM sing 282 n n H38A C38 SXM sing 283 n n HN41 N41 SXM sing 284 n n H42A C42 SXM sing 285 n n H43A C43 SXM sing 286 n n H2A C2 SXM sing 287 n n P24 O10 SXM doub 288 n n # _atom_sites.entry_id 2X2B _atom_sites.fract_transf_matrix[1][1] 0.010315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SXM A 1 101 101 SXM SXM . C 3 PT A 1 1077 1077 PT PT . D 3 PT A 1 1078 1078 PT PT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P24 SXM . . . B 2 51.586 -8.165 31.227 1 19.07 ? P24 SXM 101 A 1 HETATM 2 O O26 SXM . . . B 2 52.539 -8.81 32.303 1 21.03 ? O26 SXM 101 A 1 HETATM 3 O O27 SXM . . . B 2 50.902 -9.272 30.351 1 19.72 ? O27 SXM 101 A 1 HETATM 4 C C28 SXM . . . B 2 51.414 -9.803 29.134 1 21.15 ? C28 SXM 101 A 1 HETATM 5 C C29 SXM . . . B 2 50.582 -11.042 28.92 1 22.97 ? C29 SXM 101 A 1 HETATM 6 C C30 SXM . . . B 2 49.451 -10.634 27.984 1 22.04 ? C30 SXM 101 A 1 HETATM 7 C C31 SXM . . . B 2 51.43 -12.119 28.255 1 21.77 ? C31 SXM 101 A 1 HETATM 8 C C32 SXM . . . B 2 50.188 -11.49 30.403 1 25 ? C32 SXM 101 A 1 HETATM 9 O O33 SXM . . . B 2 50.633 -12.801 30.694 1 23.85 ? O33 SXM 101 A 1 HETATM 10 C C34 SXM . . . B 2 48.74 -11.179 30.987 1 27.27 ? C34 SXM 101 A 1 HETATM 11 O O35 SXM . . . B 2 47.736 -11.058 30.299 1 29.43 ? O35 SXM 101 A 1 HETATM 12 N N36 SXM . . . B 2 48.663 -11.084 32.312 1 28.29 ? N36 SXM 101 A 1 HETATM 13 O O10 SXM . . . B 2 50.526 -7.341 31.843 1 23.74 ? O10 SXM 101 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 13 #