data_2X2K # _model_server_result.job_id K7fiJXBYqg4vWaZYzdGJeg _model_server_result.datetime_utc '2024-11-22 11:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2017}' # _entry.id 2X2K # _exptl.entry_id 2X2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.299 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-5-amino-3-[(3,5-dimethyl-1H-pyrrol-2-yl)methylidene]-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.68 _cell.angle_gamma 90 _cell.entry_id 2X2K _cell.length_a 71.6 _cell.length_b 70.912 _cell.length_c 78.871 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C15 H15 N3 O' _chem_comp.formula_weight 253.299 _chem_comp.id X2K _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-5-amino-3-[(3,5-dimethyl-1H-pyrrol-2-yl)methylidene]-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAN X2K sing 409 n n CAN CAH X2K sing 410 n y CAN CAO X2K doub 411 n y CAH CAL X2K doub 412 n y CAL CAA X2K sing 413 n n CAL NAJ X2K sing 414 n y NAJ CAO X2K sing 415 n y CAO CAE X2K sing 416 n n CAE CAQ X2K doub 417 n n CAQ CAS X2K sing 418 n n CAQ CAP X2K sing 419 n n CAS CAI X2K sing 420 n y CAS CAR X2K doub 421 n y CAI CAM X2K doub 422 n y CAM NAC X2K sing 423 n n CAM CAF X2K sing 424 n y CAF CAG X2K doub 425 z y CAG CAR X2K sing 426 n y CAR NAK X2K sing 427 n n NAK CAP X2K sing 428 n n CAP OAD X2K doub 429 n n CAB HAB1 X2K sing 430 n n CAB HAB2 X2K sing 431 n n CAB HAB3 X2K sing 432 n n CAH HAH X2K sing 433 n n CAA HAA1 X2K sing 434 n n CAA HAA2 X2K sing 435 n n CAA HAA3 X2K sing 436 n n NAJ HAJ X2K sing 437 n n CAE HAE X2K sing 438 n n CAI HAI X2K sing 439 n n NAC HAC1 X2K sing 440 n n NAC HAC2 X2K sing 441 n n CAF HAF X2K sing 442 n n CAG HAG X2K sing 443 n n NAK HAK X2K sing 444 n n # _atom_sites.entry_id 2X2K _atom_sites.fract_transf_matrix[1][1] 0.013966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002887 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 2014 2014 FMT FMT . C 2 FMT A 1 2015 2015 FMT FMT . D 2 FMT A 1 2016 2016 FMT FMT . E 3 X2K A 1 2017 2017 X2K X2K . F 4 HOH A 1 3001 3001 HOH HOH . F 4 HOH A 2 3002 3002 HOH HOH . F 4 HOH A 3 3003 3003 HOH HOH . F 4 HOH A 4 3004 3004 HOH HOH . F 4 HOH A 5 3005 3005 HOH HOH . F 4 HOH A 6 3006 3006 HOH HOH . F 4 HOH A 7 3007 3007 HOH HOH . F 4 HOH A 8 3008 3008 HOH HOH . F 4 HOH A 9 3009 3009 HOH HOH . F 4 HOH A 10 3010 3010 HOH HOH . F 4 HOH A 11 3011 3011 HOH HOH . F 4 HOH A 12 3012 3012 HOH HOH . F 4 HOH A 13 3013 3013 HOH HOH . F 4 HOH A 14 3014 3014 HOH HOH . F 4 HOH A 15 3015 3015 HOH HOH . F 4 HOH A 16 3016 3016 HOH HOH . F 4 HOH A 17 3017 3017 HOH HOH . F 4 HOH A 18 3018 3018 HOH HOH . F 4 HOH A 19 3019 3019 HOH HOH . F 4 HOH A 20 3020 3020 HOH HOH . F 4 HOH A 21 3021 3021 HOH HOH . F 4 HOH A 22 3022 3022 HOH HOH . F 4 HOH A 23 3023 3023 HOH HOH . F 4 HOH A 24 3024 3024 HOH HOH . F 4 HOH A 25 3025 3025 HOH HOH . F 4 HOH A 26 3026 3026 HOH HOH . F 4 HOH A 27 3027 3027 HOH HOH . F 4 HOH A 28 3028 3028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB X2K . . . E 3 -7.955 10.614 10.707 1 47.94 ? CAB X2K 2017 A 1 HETATM 2 C CAN X2K . . . E 3 -9.334 11.153 11.205 1 48.27 ? CAN X2K 2017 A 1 HETATM 3 C CAH X2K . . . E 3 -9.56 12.432 11.535 1 47.66 ? CAH X2K 2017 A 1 HETATM 4 C CAL X2K . . . E 3 -10.851 12.483 11.9 1 48.08 ? CAL X2K 2017 A 1 HETATM 5 C CAA X2K . . . E 3 -11.55 13.778 12.366 1 47 ? CAA X2K 2017 A 1 HETATM 6 N NAJ X2K . . . E 3 -11.445 11.275 11.805 1 46.47 ? NAJ X2K 2017 A 1 HETATM 7 C CAO X2K . . . E 3 -10.523 10.401 11.367 1 47.26 ? CAO X2K 2017 A 1 HETATM 8 C CAE X2K . . . E 3 -10.547 9.024 11.056 1 46.57 ? CAE X2K 2017 A 1 HETATM 9 C CAQ X2K . . . E 3 -11.61 8.11 11.192 1 47.02 ? CAQ X2K 2017 A 1 HETATM 10 C CAS X2K . . . E 3 -11.559 6.746 10.819 1 47.04 ? CAS X2K 2017 A 1 HETATM 11 C CAI X2K . . . E 3 -10.582 5.895 10.248 1 44.78 ? CAI X2K 2017 A 1 HETATM 12 C CAM X2K . . . E 3 -10.899 4.523 10.022 1 47.25 ? CAM X2K 2017 A 1 HETATM 13 N NAC X2K . . . E 3 -10.016 3.623 9.483 1 47.28 ? NAC X2K 2017 A 1 HETATM 14 C CAF X2K . . . E 3 -12.177 4.035 10.346 1 46.26 ? CAF X2K 2017 A 1 HETATM 15 C CAG X2K . . . E 3 -13.13 4.878 10.904 1 46.24 ? CAG X2K 2017 A 1 HETATM 16 C CAR X2K . . . E 3 -12.844 6.229 11.147 1 47.04 ? CAR X2K 2017 A 1 HETATM 17 N NAK X2K . . . E 3 -13.615 7.206 11.68 1 46.14 ? NAK X2K 2017 A 1 HETATM 18 C CAP X2K . . . E 3 -12.9 8.341 11.717 1 47.09 ? CAP X2K 2017 A 1 HETATM 19 O OAD X2K . . . E 3 -13.337 9.408 12.16 1 46.44 ? OAD X2K 2017 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #