data_2X2M # _model_server_result.job_id c72YzGZ92H6JWy9GCvi6Ow _model_server_result.datetime_utc '2024-12-26 13:07:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2015}' # _entry.id 2X2M # _exptl.entry_id 2X2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-3-[(3,5-DIMETHYL-1H-PYRROL-2-YL)METHYLIDENE]-1,3-DIHYDRO-2H-INDOL-2-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 103.5 _cell.angle_beta 99.66 _cell.angle_gamma 89.92 _cell.entry_id 2X2M _cell.length_a 50.697 _cell.length_b 50.76 _cell.length_c 74.588 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 205 A SER 904 1_555 A N PTR 206 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C PTR 206 A PTR 905 1_555 A N VAL 207 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 B C SER 205 B SER 904 1_555 B N PTR 206 B PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C PTR 206 B PTR 905 1_555 B N VAL 207 B VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C15 H14 N2 O' _chem_comp.formula_weight 238.284 _chem_comp.id X2M _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-3-[(3,5-DIMETHYL-1H-PYRROL-2-YL)METHYLIDENE]-1,3-DIHYDRO-2H-INDOL-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C5 X2M sing 409 n n C3 O4 X2M doub 410 n n C3 N1 X2M sing 411 n n C5 C7 X2M sing 412 n n C5 C19 X2M doub 413 z n C6 C7 X2M sing 414 n y C6 C11 X2M doub 415 n y C6 N1 X2M sing 416 n n C7 C8 X2M doub 417 n y C8 C9 X2M sing 418 n y C9 C10 X2M doub 419 n y C10 C11 X2M sing 420 n y C19 C21 X2M sing 421 n n C21 C26 X2M doub 422 n y C21 N22 X2M sing 423 n y C26 C25 X2M sing 424 n y C26 CAB X2M sing 425 n n C25 C24 X2M doub 426 n y C24 N22 X2M sing 427 n y C24 CAA X2M sing 428 n n N1 H1 X2M sing 429 n n C19 H19 X2M sing 430 n n C11 H11 X2M sing 431 n n C8 H8 X2M sing 432 n n C9 H9 X2M sing 433 n n C10 H10 X2M sing 434 n n N22 H22 X2M sing 435 n n C25 H25 X2M sing 436 n n CAB HAB1 X2M sing 437 n n CAB HAB2 X2M sing 438 n n CAB HAB3 X2M sing 439 n n CAA HAA1 X2M sing 440 n n CAA HAA2 X2M sing 441 n n CAA HAA3 X2M sing 442 n n # _atom_sites.entry_id 2X2M _atom_sites.fract_transf_matrix[1][1] 0.019725 _atom_sites.fract_transf_matrix[1][2] -0.000028 _atom_sites.fract_transf_matrix[1][3] 0.003449 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019701 _atom_sites.fract_transf_matrix[2][3] 0.004797 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 2014 2014 FMT FMT . D 2 FMT A 1 2015 2015 FMT FMT . E 3 X2M A 1 2016 2016 X2M X2M . F 2 FMT B 1 2012 2012 FMT FMT . G 2 FMT B 1 2013 2013 FMT FMT . H 2 FMT B 1 2014 2014 FMT FMT . I 3 X2M B 1 2015 2015 X2M X2M . J 4 HOH A 1 3001 3001 HOH HOH . J 4 HOH A 2 3002 3002 HOH HOH . J 4 HOH A 3 3003 3003 HOH HOH . J 4 HOH A 4 3004 3004 HOH HOH . J 4 HOH A 5 3005 3005 HOH HOH . J 4 HOH A 6 3006 3006 HOH HOH . J 4 HOH A 7 3007 3007 HOH HOH . J 4 HOH A 8 3008 3008 HOH HOH . J 4 HOH A 9 3009 3009 HOH HOH . J 4 HOH A 10 3010 3010 HOH HOH . J 4 HOH A 11 3011 3011 HOH HOH . J 4 HOH A 12 3012 3012 HOH HOH . J 4 HOH A 13 3013 3013 HOH HOH . J 4 HOH A 14 3014 3014 HOH HOH . J 4 HOH A 15 3015 3015 HOH HOH . J 4 HOH A 16 3016 3016 HOH HOH . J 4 HOH A 17 3017 3017 HOH HOH . J 4 HOH A 18 3018 3018 HOH HOH . J 4 HOH A 19 3019 3019 HOH HOH . J 4 HOH A 20 3020 3020 HOH HOH . J 4 HOH A 21 3021 3021 HOH HOH . J 4 HOH A 22 3022 3022 HOH HOH . J 4 HOH A 23 3023 3023 HOH HOH . J 4 HOH A 24 3024 3024 HOH HOH . J 4 HOH A 25 3025 3025 HOH HOH . J 4 HOH A 26 3026 3026 HOH HOH . K 4 HOH B 1 3001 3001 HOH HOH . K 4 HOH B 2 3002 3002 HOH HOH . K 4 HOH B 3 3003 3003 HOH HOH . K 4 HOH B 4 3004 3004 HOH HOH . K 4 HOH B 5 3005 3005 HOH HOH . K 4 HOH B 6 3006 3006 HOH HOH . K 4 HOH B 7 3007 3007 HOH HOH . K 4 HOH B 8 3008 3008 HOH HOH . K 4 HOH B 9 3009 3009 HOH HOH . K 4 HOH B 10 3010 3010 HOH HOH . K 4 HOH B 11 3011 3011 HOH HOH . K 4 HOH B 12 3012 3012 HOH HOH . K 4 HOH B 13 3013 3013 HOH HOH . K 4 HOH B 14 3014 3014 HOH HOH . K 4 HOH B 15 3015 3015 HOH HOH . K 4 HOH B 16 3016 3016 HOH HOH . K 4 HOH B 17 3017 3017 HOH HOH . K 4 HOH B 18 3018 3018 HOH HOH . K 4 HOH B 19 3019 3019 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 X2M . . . I 3 -19.354 -7.227 28.256 1 25.98 ? C3 X2M 2015 B 1 HETATM 2 C C5 X2M . . . I 3 -18.264 -6.567 27.674 1 25.55 ? C5 X2M 2015 B 1 HETATM 3 C C6 X2M . . . I 3 -17.916 -8.794 27.849 1 25.55 ? C6 X2M 2015 B 1 HETATM 4 C C7 X2M . . . I 3 -17.337 -7.582 27.415 1 25.41 ? C7 X2M 2015 B 1 HETATM 5 C C8 X2M . . . I 3 -16.058 -7.595 26.853 1 24.16 ? C8 X2M 2015 B 1 HETATM 6 C C9 X2M . . . I 3 -15.372 -8.806 26.743 1 24.52 ? C9 X2M 2015 B 1 HETATM 7 C C10 X2M . . . I 3 -15.919 -10.007 27.171 1 24.2 ? C10 X2M 2015 B 1 HETATM 8 C C11 X2M . . . I 3 -17.201 -9.995 27.724 1 25.79 ? C11 X2M 2015 B 1 HETATM 9 C C19 X2M . . . I 3 -18.071 -5.187 27.388 1 24.46 ? C19 X2M 2015 B 1 HETATM 10 C C21 X2M . . . I 3 -18.947 -4.136 27.703 1 25.07 ? C21 X2M 2015 B 1 HETATM 11 O O4 X2M . . . I 3 -20.399 -6.707 28.642 1 25.72 ? O4 X2M 2015 B 1 HETATM 12 N N1 X2M . . . I 3 -19.12 -8.543 28.365 1 25.33 ? N1 X2M 2015 B 1 HETATM 13 C C26 X2M . . . I 3 -18.639 -2.777 27.47 1 26.29 ? C26 X2M 2015 B 1 HETATM 14 C C25 X2M . . . I 3 -19.669 -1.996 27.829 1 24.04 ? C25 X2M 2015 B 1 HETATM 15 C C24 X2M . . . I 3 -20.591 -2.855 28.29 1 25.11 ? C24 X2M 2015 B 1 HETATM 16 N N22 X2M . . . I 3 -20.177 -4.124 28.216 1 24.39 ? N22 X2M 2015 B 1 HETATM 17 C CAB X2M . . . I 3 -17.326 -2.234 26.869 1 25.2 ? CAB X2M 2015 B 1 HETATM 18 C CAA X2M . . . I 3 -21.97 -2.468 28.845 1 23.9 ? CAA X2M 2015 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #