data_2X3L # _model_server_result.job_id ERLMMZtWiF1apJFQoExyBA _model_server_result.datetime_utc '2024-11-02 03:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1448}' # _entry.id 2X3L # _exptl.entry_id 2X3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.36 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SAMARIUM (III) ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.64 _cell.angle_gamma 90 _cell.entry_id 2X3L _cell.length_a 50.677 _cell.length_b 137.283 _cell.length_c 62.258 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 211 1_555 C C4A PLP . A PLP 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 A OD1 ASP 351 A ASP 351 1_555 G SM SM . A SM 1448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? metalc ? metalc2 A OD2 ASP 351 A ASP 351 1_555 G SM SM . A SM 1448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? metalc ? metalc3 A OE2 GLU 417 A GLU 417 1_555 D SM SM . A SM 1445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc4 A OE1 GLU 421 A GLU 421 1_555 E SM SM . A SM 1446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc5 A OE2 GLU 425 A GLU 425 1_555 F SM SM . A SM 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc6 A OE2 GLU 428 A GLU 428 1_555 F SM SM . A SM 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc7 E SM SM . A SM 1446 1_555 A OD1 ASN 418 A ASN 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc8 E SM SM . A SM 1446 1_555 M O HOH . A HOH 2068 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc9 E SM SM . A SM 1446 1_555 A OE2 GLU 421 A GLU 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc10 F SM SM . A SM 1447 1_555 A OE1 GLU 425 A GLU 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc11 F SM SM . A SM 1447 1_555 A OE1 GLU 428 A GLU 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc12 G SM SM . A SM 1448 1_555 M O HOH . A HOH 2056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc13 G SM SM . A SM 1448 1_555 M O HOH . A HOH 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc14 B OE1 GLU 119 B GLU 119 1_555 J SM SM . B SM 1445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc15 B OE1 GLU 124 B GLU 124 1_555 K SM SM . B SM 1446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale2 B NZ LYS 211 B LYS 211 1_555 I C4A PLP . B PLP 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc16 J SM SM . B SM 1445 1_555 N O HOH . B HOH 2021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.441 ? metalc ? metalc17 J SM SM . B SM 1445 1_555 N O HOH . B HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.424 ? metalc ? metalc18 J SM SM . B SM 1445 1_555 N O HOH . B HOH 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.461 ? metalc ? metalc19 K SM SM . B SM 1446 1_555 B OE2 GLU 124 B GLU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? metalc ? metalc20 L SM SM . B SM 1447 1_555 N O HOH . B HOH 2040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc21 L SM SM . B SM 1447 1_555 B OE1 GLU 301 B GLU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc22 L SM SM . B SM 1447 1_555 B OE2 GLU 301 B GLU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'Sm 3' _chem_comp.formula_weight 150.36 _chem_comp.id SM _chem_comp.mon_nstd_flag . _chem_comp.name 'SAMARIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2X3L _atom_sites.fract_transf_matrix[1][1] 0.019733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 1211 1211 PLP PLP . D 3 SM A 1 1445 1445 SM SM . E 3 SM A 1 1446 1446 SM SM . F 3 SM A 1 1447 1447 SM SM . G 3 SM A 1 1448 1448 SM SM . H 4 EDO A 1 1449 1449 EDO EDO . I 2 PLP B 1 1211 1211 PLP PLP . J 3 SM B 1 1445 1445 SM SM . K 3 SM B 1 1446 1446 SM SM . L 3 SM B 1 1447 1447 SM SM . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . M 5 HOH A 39 2039 2039 HOH HOH . M 5 HOH A 40 2040 2040 HOH HOH . M 5 HOH A 41 2041 2041 HOH HOH . M 5 HOH A 42 2042 2042 HOH HOH . M 5 HOH A 43 2043 2043 HOH HOH . M 5 HOH A 44 2044 2044 HOH HOH . M 5 HOH A 45 2045 2045 HOH HOH . M 5 HOH A 46 2046 2046 HOH HOH . M 5 HOH A 47 2047 2047 HOH HOH . M 5 HOH A 48 2048 2048 HOH HOH . M 5 HOH A 49 2049 2049 HOH HOH . M 5 HOH A 50 2050 2050 HOH HOH . M 5 HOH A 51 2051 2051 HOH HOH . M 5 HOH A 52 2052 2052 HOH HOH . M 5 HOH A 53 2053 2053 HOH HOH . M 5 HOH A 54 2054 2054 HOH HOH . M 5 HOH A 55 2055 2055 HOH HOH . M 5 HOH A 56 2056 2056 HOH HOH . M 5 HOH A 57 2057 2057 HOH HOH . M 5 HOH A 58 2058 2058 HOH HOH . M 5 HOH A 59 2059 2059 HOH HOH . M 5 HOH A 60 2060 2060 HOH HOH . M 5 HOH A 61 2061 2061 HOH HOH . M 5 HOH A 62 2062 2062 HOH HOH . M 5 HOH A 63 2063 2063 HOH HOH . M 5 HOH A 64 2064 2064 HOH HOH . M 5 HOH A 65 2065 2065 HOH HOH . M 5 HOH A 66 2066 2066 HOH HOH . M 5 HOH A 67 2067 2067 HOH HOH . M 5 HOH A 68 2068 2068 HOH HOH . M 5 HOH A 69 2069 2069 HOH HOH . M 5 HOH A 70 2070 2070 HOH HOH . M 5 HOH A 71 2071 2071 HOH HOH . N 5 HOH B 1 2001 2001 HOH HOH . N 5 HOH B 2 2002 2002 HOH HOH . N 5 HOH B 3 2003 2003 HOH HOH . N 5 HOH B 4 2004 2004 HOH HOH . N 5 HOH B 5 2005 2005 HOH HOH . N 5 HOH B 6 2006 2006 HOH HOH . N 5 HOH B 7 2007 2007 HOH HOH . N 5 HOH B 8 2008 2008 HOH HOH . N 5 HOH B 9 2009 2009 HOH HOH . N 5 HOH B 10 2010 2010 HOH HOH . N 5 HOH B 11 2011 2011 HOH HOH . N 5 HOH B 12 2012 2012 HOH HOH . N 5 HOH B 13 2013 2013 HOH HOH . N 5 HOH B 14 2014 2014 HOH HOH . N 5 HOH B 15 2015 2015 HOH HOH . N 5 HOH B 16 2016 2016 HOH HOH . N 5 HOH B 17 2017 2017 HOH HOH . N 5 HOH B 18 2018 2018 HOH HOH . N 5 HOH B 19 2019 2019 HOH HOH . N 5 HOH B 20 2020 2020 HOH HOH . N 5 HOH B 21 2021 2021 HOH HOH . N 5 HOH B 22 2022 2022 HOH HOH . N 5 HOH B 23 2023 2023 HOH HOH . N 5 HOH B 24 2024 2024 HOH HOH . N 5 HOH B 25 2025 2025 HOH HOH . N 5 HOH B 26 2026 2026 HOH HOH . N 5 HOH B 27 2027 2027 HOH HOH . N 5 HOH B 28 2028 2028 HOH HOH . N 5 HOH B 29 2029 2029 HOH HOH . N 5 HOH B 30 2030 2030 HOH HOH . N 5 HOH B 31 2031 2031 HOH HOH . N 5 HOH B 32 2032 2032 HOH HOH . N 5 HOH B 33 2033 2033 HOH HOH . N 5 HOH B 34 2034 2034 HOH HOH . N 5 HOH B 35 2035 2035 HOH HOH . N 5 HOH B 36 2036 2036 HOH HOH . N 5 HOH B 37 2037 2037 HOH HOH . N 5 HOH B 38 2038 2038 HOH HOH . N 5 HOH B 39 2039 2039 HOH HOH . N 5 HOH B 40 2040 2040 HOH HOH . N 5 HOH B 41 2041 2041 HOH HOH . N 5 HOH B 42 2042 2042 HOH HOH . N 5 HOH B 43 2043 2043 HOH HOH . N 5 HOH B 44 2044 2044 HOH HOH . N 5 HOH B 45 2045 2045 HOH HOH . N 5 HOH B 46 2046 2046 HOH HOH . N 5 HOH B 47 2047 2047 HOH HOH . N 5 HOH B 48 2048 2048 HOH HOH . N 5 HOH B 49 2049 2049 HOH HOH . N 5 HOH B 50 2050 2050 HOH HOH . N 5 HOH B 51 2051 2051 HOH HOH . N 5 HOH B 52 2052 2052 HOH HOH . N 5 HOH B 53 2053 2053 HOH HOH . N 5 HOH B 54 2054 2054 HOH HOH . N 5 HOH B 55 2055 2055 HOH HOH . N 5 HOH B 56 2056 2056 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SM _atom_site.label_atom_id SM _atom_site.label_comp_id SM _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.176 _atom_site.Cartn_y -24.309 _atom_site.Cartn_z 35.857 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SM _atom_site.auth_comp_id SM _atom_site.auth_seq_id 1448 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #