data_2X3O # _model_server_result.job_id hhELwGyvWBmkfsTro_FbkQ _model_server_result.datetime_utc '2024-11-29 08:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1171}' # _entry.id 2X3O # _exptl.entry_id 2X3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.19 _cell.angle_gamma 90 _cell.entry_id 2X3O _cell.length_a 146.44 _cell.length_b 51.74 _cell.length_c 68.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 31 A GLN 63 1_555 A N MSE 32 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 32 A MSE 64 1_555 A N LEU 33 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LYS 105 A LYS 137 1_555 A N MSE 106 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 106 A MSE 138 1_555 A N PRO 107 A PRO 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 A C LEU 131 A LEU 163 1_555 A N MSE 132 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C MSE 132 A MSE 164 1_555 A N ALA 133 A ALA 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C ASP 134 A ASP 166 1_555 A N MSE 135 A MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MSE 135 A MSE 167 1_555 A N ASP 136 A ASP 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 B C GLN 31 B GLN 63 1_555 B N MSE 32 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C MSE 32 B MSE 64 1_555 B N LEU 33 B LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 B C LYS 105 B LYS 137 1_555 B N MSE 106 B MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 B C MSE 106 B MSE 138 1_555 B N PRO 107 B PRO 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale13 B C LEU 131 B LEU 163 1_555 B N MSE 132 B MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 B C MSE 132 B MSE 164 1_555 B N ALA 133 B ALA 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C ASP 134 B ASP 166 1_555 B N MSE 135 B MSE 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 B C MSE 135 B MSE 167 1_555 B N ASP 136 B ASP 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2X3O _atom_sites.fract_transf_matrix[1][1] 0.006829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001475 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1171 1171 GOL GOL . D 3 CL B 1 1171 1171 CL CL . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH B 1 2001 2001 HOH HOH . F 4 HOH B 2 2002 2002 HOH HOH . F 4 HOH B 3 2003 2003 HOH HOH . F 4 HOH B 4 2004 2004 HOH HOH . F 4 HOH B 5 2005 2005 HOH HOH . F 4 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 32.481 12.523 12.17 1 78.25 ? C1 GOL 1171 A 1 HETATM 2 O O1 GOL . . . C 2 33.345 13.397 12.878 1 77.42 ? O1 GOL 1171 A 1 HETATM 3 C C2 GOL . . . C 2 31.529 13.303 11.241 1 78.44 ? C2 GOL 1171 A 1 HETATM 4 O O2 GOL . . . C 2 31.616 14.718 11.405 1 76.79 ? O2 GOL 1171 A 1 HETATM 5 C C3 GOL . . . C 2 31.745 12.878 9.781 1 77.39 ? C3 GOL 1171 A 1 HETATM 6 O O3 GOL . . . C 2 30.586 13.079 8.994 1 74.56 ? O3 GOL 1171 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1215 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #