data_2X4K # _model_server_result.job_id pH-IM8elbViXNSMbR300Og _model_server_result.datetime_utc '2024-11-26 21:36:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1062}' # _entry.id 2X4K # _exptl.entry_id 2X4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2X4K _cell.length_a 50.19 _cell.length_b 50.19 _cell.length_c 150.62 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.19 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 25.095 43.465815 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 31 A GLU 30 1_555 F ZN ZN . A ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc2 A NE2 HIS 42 A HIS 41 1_555 E ZN ZN . A ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A OE2 GLU 46 A GLU 45 1_555 D ZN ZN . A ZN 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc4 A OE2 GLU 46 A GLU 45 2_655 D ZN ZN . A ZN 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc5 A OE2 GLU 46 A GLU 45 3_665 D ZN ZN . A ZN 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc6 C O2 PO4 . A PO4 1062 1_555 D ZN ZN . A ZN 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc7 C O2 PO4 . A PO4 1062 1_555 D ZN ZN . A ZN 1063 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc8 C O2 PO4 . A PO4 1062 1_555 D ZN ZN . A ZN 1063 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc9 E ZN ZN . A ZN 1064 1_555 K O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 E ZN ZN . A ZN 1064 1_555 B NE2 HIS 42 B HIS 41 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc11 E ZN ZN . A ZN 1064 1_555 B OD2 ASP 62 B ASP 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc12 F ZN ZN . A ZN 1065 1_555 B OE1 GLU 25 B GLU 24 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc13 F ZN ZN . A ZN 1065 1_555 B OD2 ASP 28 B ASP 27 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc14 F ZN ZN . A ZN 1065 1_555 G O ACT . B ACT 1062 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc15 F ZN ZN . A ZN 1065 1_555 G OXT ACT . B ACT 1062 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc16 F ZN ZN . A ZN 1065 3_565 G OXT ACT . B ACT 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc17 F ZN ZN . A ZN 1065 3_565 G O ACT . B ACT 1062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc18 B OE2 GLU 46 B GLU 45 3_665 I ZN ZN . B ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc19 B OE2 GLU 46 B GLU 45 2_655 I ZN ZN . B ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc20 B OE2 GLU 46 B GLU 45 1_555 I ZN ZN . B ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc21 B OE1 GLU 46 B GLU 45 1_555 I ZN ZN . B ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc22 B OE1 GLU 47 B GLU 46 1_555 J ZN ZN . B ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc23 B OE2 GLU 47 B GLU 46 1_555 J ZN ZN . B ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc24 B NE2 HIS 52 B HIS 51 2_655 J ZN ZN . B ZN 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc25 H O4 PO4 . B PO4 1063 1_555 I ZN ZN . B ZN 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? metalc ? metalc26 H O4 PO4 . B PO4 1063 1_555 I ZN ZN . B ZN 1064 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc27 H O4 PO4 . B PO4 1063 1_555 I ZN ZN . B ZN 1064 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 230 n n P O2 PO4 sing 231 n n P O3 PO4 sing 232 n n P O4 PO4 sing 233 n n # _atom_sites.entry_id 2X4K _atom_sites.fract_transf_matrix[1][1] 0.019924 _atom_sites.fract_transf_matrix[1][2] 0.011503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 1062 1062 PO4 PO4 . D 3 ZN A 1 1063 1063 ZN ZN . E 3 ZN A 1 1064 1064 ZN ZN . F 3 ZN A 1 1065 1065 ZN ZN . G 4 ACT B 1 1062 1062 ACT ACT . H 2 PO4 B 1 1063 1063 PO4 PO4 . I 3 ZN B 1 1064 1064 ZN ZN . J 3 ZN B 1 1065 1065 ZN ZN . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . L 5 HOH B 1 2001 2001 HOH HOH . L 5 HOH B 2 2002 2002 HOH HOH . L 5 HOH B 3 2003 2003 HOH HOH . L 5 HOH B 4 2004 2004 HOH HOH . L 5 HOH B 5 2005 2005 HOH HOH . L 5 HOH B 6 2006 2006 HOH HOH . L 5 HOH B 7 2007 2007 HOH HOH . L 5 HOH B 8 2008 2008 HOH HOH . L 5 HOH B 9 2009 2009 HOH HOH . L 5 HOH B 10 2010 2010 HOH HOH . L 5 HOH B 11 2011 2011 HOH HOH . L 5 HOH B 12 2012 2012 HOH HOH . L 5 HOH B 13 2013 2013 HOH HOH . L 5 HOH B 14 2014 2014 HOH HOH . L 5 HOH B 15 2015 2015 HOH HOH . L 5 HOH B 16 2016 2016 HOH HOH . L 5 HOH B 17 2017 2017 HOH HOH . L 5 HOH B 18 2018 2018 HOH HOH . L 5 HOH B 19 2019 2019 HOH HOH . L 5 HOH B 20 2020 2020 HOH HOH . L 5 HOH B 21 2021 2021 HOH HOH . L 5 HOH B 22 2022 2022 HOH HOH . L 5 HOH B 23 2023 2023 HOH HOH . L 5 HOH B 24 2024 2024 HOH HOH . L 5 HOH B 25 2025 2025 HOH HOH . L 5 HOH B 26 2026 2026 HOH HOH . L 5 HOH B 27 2027 2027 HOH HOH . L 5 HOH B 28 2028 2028 HOH HOH . L 5 HOH B 29 2029 2029 HOH HOH . L 5 HOH B 30 2030 2030 HOH HOH . L 5 HOH B 31 2031 2031 HOH HOH . L 5 HOH B 32 2032 2032 HOH HOH . L 5 HOH B 33 2033 2033 HOH HOH . L 5 HOH B 34 2034 2034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 25.126 14.411 15.893 0.33 10.18 ? P PO4 1062 A 1 HETATM 2 O O1 PO4 . . . C 2 26.298 14.004 16.751 0.33 11.82 ? O1 PO4 1062 A 1 HETATM 3 O O2 PO4 . . . C 2 25.617 14.67 14.487 0.33 11.69 ? O2 PO4 1062 A 1 HETATM 4 O O3 PO4 . . . C 2 24.149 13.264 15.85 0.33 12.28 ? O3 PO4 1062 A 1 HETATM 5 O O4 PO4 . . . C 2 24.459 15.651 16.426 0.33 12.59 ? O4 PO4 1062 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #