data_2X4Z # _model_server_result.job_id nJGzZ_ae7HKxKSQUrTiiaQ _model_server_result.datetime_utc '2024-11-27 00:16:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2x4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1593}' # _entry.id 2X4Z # _exptl.entry_id 2X4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.624 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PF-3758309 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2X4Z _cell.length_a 55.654 _cell.length_b 65.923 _cell.length_c 84.653 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2X4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 178 A LYS 473 1_555 A N SEP 179 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 179 A SEP 474 1_555 A N LEU 180 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C25 H30 N8 O S' _chem_comp.formula_weight 490.624 _chem_comp.id 7KC _chem_comp.mon_nstd_flag . _chem_comp.name PF-3758309 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 N25 7KC sing 1 n n N25 C26 7KC sing 2 n n N25 C24 7KC sing 3 n n C24 C23 7KC sing 4 n n C29 C30 7KC doub 5 n y C29 C28 7KC sing 6 n y O21 C20 7KC doub 7 n n C23 C28 7KC sing 8 n n C23 N22 7KC sing 9 n n C30 C31 7KC sing 10 n y C28 C33 7KC doub 11 n y C20 N22 7KC sing 12 n n C20 N18 7KC sing 13 n n C34 C19 7KC sing 14 n n C31 C32 7KC doub 15 n y C33 C32 7KC sing 16 n y C35 C19 7KC sing 17 n n N18 C19 7KC sing 18 n n N18 C17 7KC sing 19 n n C19 C14 7KC sing 20 n n C17 C13 7KC sing 21 n n C14 C13 7KC doub 22 n y C14 N15 7KC sing 23 n y C13 C12 7KC sing 24 n y N15 N16 7KC sing 25 n y C12 N16 7KC doub 26 n y C12 N10 7KC sing 27 n n C11 C4 7KC sing 28 n n N5 C4 7KC doub 29 n y N5 C6 7KC sing 30 n y C4 N3 7KC sing 31 n y N10 C6 7KC sing 32 n n C6 C1 7KC doub 33 n y N3 C2 7KC doub 34 n y C1 C2 7KC sing 35 n y C1 S7 7KC sing 36 n y C2 C9 7KC sing 37 n y S7 C8 7KC sing 38 n y C9 C8 7KC doub 39 n y C8 H1 7KC sing 40 n n C9 H2 7KC sing 41 n n C11 H3 7KC sing 42 n n C11 H4 7KC sing 43 n n C11 H5 7KC sing 44 n n C24 H6 7KC sing 45 n n C24 H7 7KC sing 46 n n C27 H9 7KC sing 47 n n C27 H10 7KC sing 48 n n C27 H11 7KC sing 49 n n C30 H12 7KC sing 50 n n C31 H13 7KC sing 51 n n C32 H14 7KC sing 52 n n C33 H15 7KC sing 53 n n C34 H16 7KC sing 54 n n C34 H17 7KC sing 55 n n C34 H18 7KC sing 56 n n C35 H19 7KC sing 57 n n C35 H20 7KC sing 58 n n C35 H21 7KC sing 59 n n C29 H22 7KC sing 60 n n C23 H23 7KC sing 61 n n C26 H24 7KC sing 62 n n C26 H25 7KC sing 63 n n C26 H26 7KC sing 64 n n N22 H27 7KC sing 65 n n C17 H28 7KC sing 66 n n C17 H29 7KC sing 67 n n N15 H30 7KC sing 68 n n N10 H31 7KC sing 69 n n # _atom_sites.entry_id 2X4Z _atom_sites.fract_transf_matrix[1][1] 0.017968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1591 1591 GOL GOL . C 2 GOL A 1 1592 1592 GOL GOL . D 3 7KC A 1 1593 1593 7KC X4Z . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . E 4 HOH A 74 2074 2074 HOH HOH . E 4 HOH A 75 2075 2075 HOH HOH . E 4 HOH A 76 2076 2076 HOH HOH . E 4 HOH A 77 2077 2077 HOH HOH . E 4 HOH A 78 2078 2078 HOH HOH . E 4 HOH A 79 2079 2079 HOH HOH . E 4 HOH A 80 2080 2080 HOH HOH . E 4 HOH A 81 2081 2081 HOH HOH . E 4 HOH A 82 2082 2082 HOH HOH . E 4 HOH A 83 2083 2083 HOH HOH . E 4 HOH A 84 2084 2084 HOH HOH . E 4 HOH A 85 2085 2085 HOH HOH . E 4 HOH A 86 2086 2086 HOH HOH . E 4 HOH A 87 2087 2087 HOH HOH . E 4 HOH A 88 2088 2088 HOH HOH . E 4 HOH A 89 2089 2089 HOH HOH . E 4 HOH A 90 2090 2090 HOH HOH . E 4 HOH A 91 2091 2091 HOH HOH . E 4 HOH A 92 2092 2092 HOH HOH . E 4 HOH A 93 2093 2093 HOH HOH . E 4 HOH A 94 2094 2094 HOH HOH . E 4 HOH A 95 2095 2095 HOH HOH . E 4 HOH A 96 2096 2096 HOH HOH . E 4 HOH A 97 2097 2097 HOH HOH . E 4 HOH A 98 2098 2098 HOH HOH . E 4 HOH A 99 2099 2099 HOH HOH . E 4 HOH A 100 2100 2100 HOH HOH . E 4 HOH A 101 2101 2101 HOH HOH . E 4 HOH A 102 2102 2102 HOH HOH . E 4 HOH A 103 2103 2103 HOH HOH . E 4 HOH A 104 2104 2104 HOH HOH . E 4 HOH A 105 2105 2105 HOH HOH . E 4 HOH A 106 2106 2106 HOH HOH . E 4 HOH A 107 2107 2107 HOH HOH . E 4 HOH A 108 2108 2108 HOH HOH . E 4 HOH A 109 2109 2109 HOH HOH . E 4 HOH A 110 2110 2110 HOH HOH . E 4 HOH A 111 2111 2111 HOH HOH . E 4 HOH A 112 2112 2112 HOH HOH . E 4 HOH A 113 2113 2113 HOH HOH . E 4 HOH A 114 2114 2114 HOH HOH . E 4 HOH A 115 2115 2115 HOH HOH . E 4 HOH A 116 2116 2116 HOH HOH . E 4 HOH A 117 2117 2117 HOH HOH . E 4 HOH A 118 2118 2118 HOH HOH . E 4 HOH A 119 2119 2119 HOH HOH . E 4 HOH A 120 2120 2120 HOH HOH . E 4 HOH A 121 2121 2121 HOH HOH . E 4 HOH A 122 2122 2122 HOH HOH . E 4 HOH A 123 2123 2123 HOH HOH . E 4 HOH A 124 2124 2124 HOH HOH . E 4 HOH A 125 2125 2125 HOH HOH . E 4 HOH A 126 2126 2126 HOH HOH . E 4 HOH A 127 2127 2127 HOH HOH . E 4 HOH A 128 2128 2128 HOH HOH . E 4 HOH A 129 2129 2129 HOH HOH . E 4 HOH A 130 2130 2130 HOH HOH . E 4 HOH A 131 2131 2131 HOH HOH . E 4 HOH A 132 2132 2132 HOH HOH . E 4 HOH A 133 2133 2133 HOH HOH . E 4 HOH A 134 2134 2134 HOH HOH . E 4 HOH A 135 2135 2135 HOH HOH . E 4 HOH A 136 2136 2136 HOH HOH . E 4 HOH A 137 2137 2137 HOH HOH . E 4 HOH A 138 2138 2138 HOH HOH . E 4 HOH A 139 2139 2139 HOH HOH . E 4 HOH A 140 2140 2140 HOH HOH . E 4 HOH A 141 2141 2141 HOH HOH . E 4 HOH A 142 2142 2142 HOH HOH . E 4 HOH A 143 2143 2143 HOH HOH . E 4 HOH A 144 2144 2144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7KC . . . D 3 19.258 15.966 61.125 1 20.97 ? C1 7KC 1593 A 1 HETATM 2 C C2 7KC . . . D 3 19.837 15.027 60.202 1 32.75 ? C2 7KC 1593 A 1 HETATM 3 C C8 7KC . . . D 3 18.259 13.68 61.356 1 32.75 ? C8 7KC 1593 A 1 HETATM 4 C C9 7KC . . . D 3 19.252 13.728 60.348 1 30.16 ? C9 7KC 1593 A 1 HETATM 5 C C11 7KC . . . D 3 22.311 17.221 58.441 1 23.33 ? C11 7KC 1593 A 1 HETATM 6 C C12 7KC . . . D 3 19.536 19.589 62.207 1 20.61 ? C12 7KC 1593 A 1 HETATM 7 C C13 7KC . . . D 3 20.018 20.503 61.24 1 19.58 ? C13 7KC 1593 A 1 HETATM 8 C C14 7KC . . . D 3 20.228 21.648 61.966 1 17.2 ? C14 7KC 1593 A 1 HETATM 9 N N18 7KC . . . D 3 20.624 22.189 59.796 1 16.74 ? N18 7KC 1593 A 1 HETATM 10 C C19 7KC . . . D 3 20.766 22.816 61.166 1 20.4 ? C19 7KC 1593 A 1 HETATM 11 C C20 7KC . . . D 3 20.777 22.918 58.654 1 18.11 ? C20 7KC 1593 A 1 HETATM 12 C C24 7KC . . . D 3 20.019 22.325 55.029 1 13.84 ? C24 7KC 1593 A 1 HETATM 13 N N25 7KC . . . D 3 18.541 22.324 55.08 1 20.68 ? N25 7KC 1593 A 1 HETATM 14 C C27 7KC . . . D 3 17.877 21.821 56.295 1 8.37 ? C27 7KC 1593 A 1 HETATM 15 C C30 7KC . . . D 3 24.56 23.283 55.885 1 18.83 ? C30 7KC 1593 A 1 HETATM 16 C C31 7KC . . . D 3 24.668 24.369 54.96 1 18.07 ? C31 7KC 1593 A 1 HETATM 17 C C32 7KC . . . D 3 23.511 25.032 54.454 1 16.8 ? C32 7KC 1593 A 1 HETATM 18 C C33 7KC . . . D 3 22.218 24.604 54.878 1 14.94 ? C33 7KC 1593 A 1 HETATM 19 C C34 7KC . . . D 3 19.836 24.023 61.414 1 8.95 ? C34 7KC 1593 A 1 HETATM 20 C C35 7KC . . . D 3 22.199 23.173 61.621 1 15.73 ? C35 7KC 1593 A 1 HETATM 21 C C29 7KC . . . D 3 23.263 22.859 56.302 1 24.26 ? C29 7KC 1593 A 1 HETATM 22 C C28 7KC . . . D 3 22.093 23.516 55.799 1 22.4 ? C28 7KC 1593 A 1 HETATM 23 C C23 7KC . . . D 3 20.728 23.074 56.213 1 15.21 ? C23 7KC 1593 A 1 HETATM 24 C C26 7KC . . . D 3 18.055 21.52 53.937 1 19.28 ? C26 7KC 1593 A 1 HETATM 25 N N22 7KC . . . D 3 20.603 22.313 57.489 1 13.35 ? N22 7KC 1593 A 1 HETATM 26 O O21 7KC . . . D 3 21.086 24.107 58.701 1 17.67 ? O21 7KC 1593 A 1 HETATM 27 C C17 7KC . . . D 3 20.28 20.706 59.801 1 10.83 ? C17 7KC 1593 A 1 HETATM 28 N N15 7KC . . . D 3 19.908 21.511 63.262 1 22.2 ? N15 7KC 1593 A 1 HETATM 29 N N16 7KC . . . D 3 19.456 20.18 63.418 1 21.17 ? N16 7KC 1593 A 1 HETATM 30 N N10 7KC . . . D 3 19.225 18.186 61.912 1 18.77 ? N10 7KC 1593 A 1 HETATM 31 C C6 7KC . . . D 3 19.74 17.283 61.079 1 22.51 ? C6 7KC 1593 A 1 HETATM 32 S S7 7KC . . . D 3 18.077 15.202 62.08 1 26.66 ? S7 7KC 1593 A 1 HETATM 33 N N3 7KC . . . D 3 20.839 15.486 59.335 1 19.37 ? N3 7KC 1593 A 1 HETATM 34 C C4 7KC . . . D 3 21.261 16.766 59.348 1 13.61 ? C4 7KC 1593 A 1 HETATM 35 N N5 7KC . . . D 3 20.715 17.656 60.21 1 23.28 ? N5 7KC 1593 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #